* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘backbone’ ...
** this is package ‘backbone’ version ‘2.1.4’
** package ‘backbone’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpU7C8hO/R.INSTALL21fce1553711a8/backbone/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fastball.cpp -o fastball.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o backbone.so RcppExports.o fastball.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpU7C8hO/R.INSTALL21fce1553711a8/backbone/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpU7C8hO/R.INSTALL21fce1553711a8/backbone/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpU7C8hO/R.INSTALL21fce1553711a8/backbone/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-backbone/00new/backbone/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘backbone’
finding HTML links ... done
backbone html
backbone.extract html
backbone.suggest html
Rd warning: backbone.suggest.Rd:10: missing link ‘Matrix’
Rd warning: backbone.suggest.Rd:10: missing link ‘igraph’
bicm html
disparity html
Rd warning: disparity.Rd:18: missing link ‘Matrix’
Rd warning: disparity.Rd:18: missing link ‘igraph’
fastball html
fdsm html
Rd warning: fdsm.Rd:21: missing link ‘Matrix’
Rd warning: fdsm.Rd:21: missing link ‘igraph’
fixedcol html
Rd warning: fixedcol.Rd:18: missing link ‘Matrix’
Rd warning: fixedcol.Rd:18: missing link ‘igraph’
fixedfill html
Rd warning: fixedfill.Rd:18: missing link ‘Matrix’
Rd warning: fixedfill.Rd:18: missing link ‘igraph’
fixedrow html
Rd warning: fixedrow.Rd:18: missing link ‘Matrix’
Rd warning: fixedrow.Rd:18: missing link ‘igraph’
frommatrix html
global html
Rd warning: global.Rd:17: missing link ‘Matrix’
Rd warning: global.Rd:17: missing link ‘igraph’
lans html
Rd warning: lans.Rd:18: missing link ‘Matrix’
Rd warning: lans.Rd:18: missing link ‘igraph’
logit html
loglikelihood_bicm html
loglikelihood_hessian_diag_bicm html
loglikelihood_prime_bicm html
mlf html
Rd warning: mlf.Rd:18: missing link ‘Matrix’
Rd warning: mlf.Rd:18: missing link ‘igraph’
osdsm html
Rd warning: osdsm.Rd:21: missing link ‘Matrix’
Rd warning: osdsm.Rd:21: missing link ‘igraph’
pb html
sdsm html
Rd warning: sdsm.Rd:19: missing link ‘Matrix’
Rd warning: sdsm.Rd:19: missing link ‘igraph’
sparsify html
Rd warning: sparsify.Rd:20: missing link ‘Matrix’
Rd warning: sparsify.Rd:20: missing link ‘igraph’
sparsify.with.geometric html
Rd warning: sparsify.with.geometric.Rd:10: missing link ‘Matrix’
Rd warning: sparsify.with.geometric.Rd:10: missing link ‘igraph’
sparsify.with.gspar html
Rd warning: sparsify.with.gspar.Rd:10: missing link ‘Matrix’
Rd warning: sparsify.with.gspar.Rd:10: missing link ‘igraph’
sparsify.with.hypergeometric html
Rd warning: sparsify.with.hypergeometric.Rd:10: missing link ‘Matrix’
Rd warning: sparsify.with.hypergeometric.Rd:10: missing link ‘igraph’
sparsify.with.jaccard html
Rd warning: sparsify.with.jaccard.Rd:10: missing link ‘Matrix’
Rd warning: sparsify.with.jaccard.Rd:10: missing link ‘igraph’
sparsify.with.localdegree html
Rd warning: sparsify.with.localdegree.Rd:10: missing link ‘Matrix’
Rd warning: sparsify.with.localdegree.Rd:10: missing link ‘igraph’
sparsify.with.lspar html
Rd warning: sparsify.with.lspar.Rd:10: missing link ‘Matrix’
Rd warning: sparsify.with.lspar.Rd:10: missing link ‘igraph’
sparsify.with.meetmin html
Rd warning: sparsify.with.meetmin.Rd:10: missing link ‘Matrix’
Rd warning: sparsify.with.meetmin.Rd:10: missing link ‘igraph’
sparsify.with.quadrilateral html
Rd warning: sparsify.with.quadrilateral.Rd:10: missing link ‘Matrix’
Rd warning: sparsify.with.quadrilateral.Rd:10: missing link ‘igraph’
sparsify.with.simmelian html
Rd warning: sparsify.with.simmelian.Rd:10: missing link ‘Matrix’
Rd warning: sparsify.with.simmelian.Rd:10: missing link ‘igraph’
sparsify.with.skeleton html
Rd warning: sparsify.with.skeleton.Rd:10: missing link ‘Matrix’
Rd warning: sparsify.with.skeleton.Rd:10: missing link ‘igraph’
tomatrix html
trials.needed html
write.narrative html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (backbone)