* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘babelmixr2’ ...
** package ‘babelmixr2’ successfully unpacked and MD5 sums checked
** using staged installation
--------[begin src/Makevars]--------
# -*- mode: makefile-gmake -*-
ARMA=`"$(R_HOME)/bin$(R_ARCH_BIN)/Rscript" -e 'cat(file.path(find.package("RcppArmadillo"),"include"))'`
RCPP=`"$(R_HOME)/bin$(R_ARCH_BIN)/Rscript" -e 'cat(file.path(find.package("Rcpp"),"include"))'`
EG=`"$(R_HOME)/bin$(R_ARCH_BIN)/Rscript" -e 'cat(file.path(find.package("RcppEigen"),"include"))'`
PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)
PKG_CXXFLAGS = -Id -isystem"$(EG)" -isystem"$(RCPP)" -isystem"$(ARMA)"
SHLIB_LDFLAGS = $(SHLIB_CXXLDFLAGS)
SHLIB_LD = $(SHLIB_CXXLD)
--------[end src/Makevars]--------
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpHb5IJV/R.INSTALL3e6dbe7c63581b/babelmixr2/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rxode2/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rxode2parse/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -Id -isystem"`"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript" -e 'cat(file.path(find.package("RcppEigen"),"include"))'`" -isystem"`"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript" -e 'cat(file.path(find.package("Rcpp"),"include"))'`" -isystem"`"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript" -e 'cat(file.path(find.package("RcppArmadillo"),"include"))'`" -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rxode2/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rxode2parse/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -Id -isystem"`"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript" -e 'cat(file.path(find.package("RcppEigen"),"include"))'`" -isystem"`"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript" -e 'cat(file.path(find.package("Rcpp"),"include"))'`" -isystem"`"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript" -e 'cat(file.path(find.package("RcppArmadillo"),"include"))'`" -fpic -g -O2 -Wall -pedantic -mtune=native -c classicReverse.cpp -o classicReverse.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rxode2/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rxode2parse/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rxode2/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rxode2parse/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -Id -isystem"`"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript" -e 'cat(file.path(find.package("RcppEigen"),"include"))'`" -isystem"`"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript" -e 'cat(file.path(find.package("Rcpp"),"include"))'`" -isystem"`"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript" -e 'cat(file.path(find.package("RcppArmadillo"),"include"))'`" -fpic -g -O2 -Wall -pedantic -mtune=native -c transform.cpp -o transform.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o babelmixr2.so RcppExports.o classicReverse.o init.o transform.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpHb5IJV/R.INSTALL3e6dbe7c63581b/babelmixr2/src'
make[1]: Entering directory '/tmp/RtmpHb5IJV/R.INSTALL3e6dbe7c63581b/babelmixr2/src'
make[1]: Leaving directory '/tmp/RtmpHb5IJV/R.INSTALL3e6dbe7c63581b/babelmixr2/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-babelmixr2/00new/babelmixr2/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘babelmixr2’
finding HTML links ... done
as.nlmixr2 html
bblDatToMonolix html
getStandardColNames html
modelUnitConversion html
monolixControl html
nlmixr2Est.pknca html
nmGetDistributionMonolixLines html
nmGetDistributionNonmemLines html
nonmemControl html
pkncaControl html
reexports html
rxToMonolix html
rxToNonmem html
simplifyUnit html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (babelmixr2)