* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘avidaR’ ...
** this is package ‘avidaR’ version ‘1.2.1’
** package ‘avidaR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘avidaR’
    finding HTML links ... done
    convert_org_into_seq                    html  
    convert_seq_into_org                    html  
    get_db_summary                          html  
    get_docker_image_from_experiment_id     html  
    get_doi_from_experiment_id              html  
    get_experiment_id_from_organism_id      html  
    get_genome_id_from_genome_seq           html  
    get_genome_id_from_logic_operation      html  
    get_genome_id_from_phenotype_id         html  
    get_genome_id_from_transcriptome_id     html  
    get_genome_id_of_wild_type_organisms    html  
    get_genome_seq_from_genome_id           html  
    get_logic_operation_from_phenotype_id   html  
    get_mutant_at_pos                       html  
    get_phenotype_id_from_genome_id         html  
    get_phenotype_id_from_genome_seq        html  
    get_phenotype_id_from_logic_operation   html  
    get_phenotype_id_from_transcriptome_id
                                            html  
    get_tandem_id_from_genome_id            html  
    get_tandem_id_from_genome_seq           html  
    get_tandem_id_from_logic_operation      html  
    get_tandem_id_from_phenotype_id         html  
    get_tandem_seq_from_tandem_id           html  
    get_transcriptome_id_from_genome_id     html  
    get_transcriptome_id_from_genome_seq    html  
    get_transcriptome_id_from_logic_operation
                                            html  
    get_transcriptome_id_from_phenotype_id
                                            html  
    get_transcriptome_seq_from_transcriptome_id
                                            html  
    instruction_set                         html  
    logic_operation                         html  
    plot_transcriptome                      html  
    triplestore_access                      html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (avidaR)