* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘automerge’ ... ** this is package ‘automerge’ version ‘0.4.0’ ** package ‘automerge’ successfully unpacked and MD5 sums checked ** using staged installation Checking for system automerge installation... System automerge not found, building from bundled source... Building automerge-c... using Rust package manager: 'cargo 1.91.1 (ea2d97820 2025-10-10) (built from a source tarball)' using Rust compiler: 'rustc 1.91.1 (ed61e7d7e 2025-11-07) (built from a source tarball)' Extracting vendored Rust dependencies... -- The C compiler identification is GNU 14.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc-14 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (0.5s) -- Generating done (0.0s) -- Build files have been written to: /home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/am-build Building (this may take several minutes)... gmake[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/am-build' [ 12%] Producing the bindings' artifacts with Cargo... -- Touching "/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/src/automerge/rust/automerge-c/cbindgen.toml" if NOT_EXISTS "/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/am-build/include/automerge-c/automerge.h"... -- Touched "/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/src/automerge/rust/automerge-c/cbindgen.toml". warning: profiles for the non root package will be ignored, specify profiles at the workspace root: package: /home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/src/automerge/rust/hexane/Cargo.toml workspace: /home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/src/automerge/rust/Cargo.toml Compiling proc-macro2 v1.0.106 Compiling unicode-ident v1.0.24 Compiling quote v1.0.44 Compiling serde_core v1.0.228 Compiling libc v0.2.182 Compiling syn v2.0.116 Compiling typenum v1.19.0 Compiling zmij v1.0.21 Compiling hybrid-array v0.4.7 Compiling serde v1.0.228 Compiling cfg-if v1.0.4 Compiling serde_json v1.0.149 Compiling winnow v0.7.14 Compiling serde_derive v1.0.228 Compiling toml_parser v1.0.9+spec-1.1.0 Compiling serde_spanned v1.0.4 Compiling toml_datetime v0.7.5+spec-1.1.0 Compiling crc32fast v1.5.0 Compiling equivalent v1.0.2 Compiling itoa v1.0.17 Compiling remove_dir_all v0.5.3 Compiling hashbrown v0.16.1 Compiling memchr v2.8.0 Compiling cbindgen v0.29.2 Compiling thiserror v2.0.18 Compiling fastrand v1.9.0 Compiling tempfile v3.3.0 Compiling indexmap v2.13.0 Compiling toml v0.9.12+spec-1.1.0 Compiling thiserror-impl v2.0.18 Compiling block-buffer v0.11.0 Compiling crypto-common v0.2.0 Compiling log v0.4.29 Compiling simd-adler32 v0.3.8 Compiling getrandom v0.3.4 Compiling heck v0.5.0 Compiling once_cell v1.21.3 Compiling adler2 v2.0.1 Compiling miniz_oxide v0.8.9 Compiling tracing-core v0.1.36 Compiling digest v0.11.0 Compiling tracing-attributes v0.1.31 Compiling leb128 v0.2.5 Compiling either v1.15.0 Compiling pin-project-lite v0.2.16 Compiling cpufeatures v0.2.17 Compiling rand_core v0.9.5 Compiling rand v0.9.2 Compiling sha2 v0.11.0-rc.5 Compiling automerge-c v0.3.0 (/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/src/automerge/rust/automerge-c) Compiling tracing v0.1.44 Compiling itertools v0.14.0 Compiling hexane v0.1.7 (/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/src/automerge/rust/hexane) Compiling flate2 v1.1.9 Compiling smol_str v0.2.2 Compiling hex v0.4.3 Compiling unicode-segmentation v1.12.0 Compiling rustc-hash v2.1.1 Compiling automerge v0.7.3 (/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/src/automerge/rust/automerge) Finished `release` profile [optimized] target(s) in 3m 10s -- Replacing "A_M([^_]+)_" with "AM_\1_" in "/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/am-build/include/automerge-c/automerge.h"... -- Created/updated "/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/am-build/include/automerge-c/automerge.h". -- Replacing "USIZE_" with "+8" in "/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/am-build/include/automerge-c/automerge.h"... -- Created/updated "/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/am-build/include/automerge-c/automerge.h". [ 12%] Built target automerge_core_artifacts [ 25%] Generating the enum string functions with CMake... -- Generating header file "/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/am-build/include/automerge-c/utils/enum_string.h"... -- Generating source file "/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/am-build/src/utils/enum_string.c"... [ 37%] Building C object CMakeFiles/automerge.dir/src/utils/result.c.o [ 50%] Building C object CMakeFiles/automerge.dir/src/utils/stack_callback_data.c.o [ 62%] Building C object CMakeFiles/automerge.dir/src/utils/stack.c.o [ 75%] Building C object CMakeFiles/automerge.dir/src/utils/string.c.o [ 87%] Building C object CMakeFiles/automerge.dir/src/utils/enum_string.c.o [100%] Linking C static library libautomerge.a Merging the libraries' constituent object files... Merging its dependent libraries into /home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/am-build/libautomerge.a... /usr/bin/ar -x /home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/am-build/Cargo/target/x86_64-unknown-linux-gnu/release/libautomerge_core.a /usr/bin/ar -rs libautomerge.a objects/automerge_core/*.o [100%] Built target automerge gmake[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/am-build' gmake[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/am-build' [ 12%] Built target automerge_core_artifacts [100%] Built target automerge Install the project... -- Install configuration: "Release" gmake[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/am-build' Successfully built automerge-c from source Configuration: PKG_CFLAGS: -I../am-install/include PKG_LIBS: ../am-install/lib/libautomerge.a -pthread -ldl -lm -lrt ** libs using C compiler: ‘gcc-14 (Debian 14.3.0-12) 14.3.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c changes.c -o changes.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cursors.c -o cursors.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c document.c -o document.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c errors.c -o errors.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c memory.c -o memory.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c objects.c -o objects.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sync.c -o sync.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o automerge.so changes.o cursors.o document.o errors.o init.o memory.o objects.o sync.o ../am-install/lib/libautomerge.a -pthread -ldl -lm -lrt -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJOlMIB/R.INSTALL3bffa6584d1a54/automerge/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-automerge/00new/automerge/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘automerge’ finding HTML links ... done am_apply_changes html am_change_actor_id html am_change_deps html am_change_from_bytes html am_change_hash html am_change_message html am_change_seq html am_change_size html am_change_time html am_change_to_bytes html am_clone html am_close html am_commit html am_commit_empty html am_counter html am_counter_increment html am_create html am_cursor html am_cursor_equal html am_cursor_from_bytes html am_cursor_from_string html am_cursor_position html am_cursor_to_bytes html am_cursor_to_string html am_delete html am_delete_path html am_equal html am_fork html am_get html am_get_actor html am_get_actor_hex html am_get_change_by_hash html am_get_changes html am_get_changes_added html am_get_heads html am_get_last_local_change html am_get_missing_deps html am_get_path html am_insert html am_items html am_keys html am_length html am_list html am_list_get_all html am_list_range html am_load html am_load_changes html am_load_incremental html am_map html am_map_get_all html am_map_range html am_mark html am_mark_clear html am_marks html am_marks_at html am_merge html am_pending_ops html am_put html am_put_path html am_rollback html am_save html am_save_incremental html am_set_actor html am_sync html am_sync_decode html am_sync_encode html am_sync_state html am_sync_state_decode html am_sync_state_encode html am_text html am_text_content html am_text_splice html am_text_update html am_uint64 html am_values html as.character.am_text html as.list.am_doc html as.list.am_list html as.list.am_map html as.list.am_text html as_automerge html automerge-constants html automerge-package html extract-am_doc html extract-am_object html from_automerge html length.am_doc html length.am_object html names.am_doc html names.am_map html print.am_change html print.am_counter html print.am_cursor html print.am_doc html print.am_list html print.am_map html print.am_object html print.am_syncstate html print.am_text html print.am_uint64 html replace-am_doc html replace-am_object html str.am_doc html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (automerge)