* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘automerge’ ...
** this is package ‘automerge’ version ‘0.3.1’
** package ‘automerge’ successfully unpacked and MD5 sums checked
** using staged installation
Checking for system automerge installation...
System automerge not found, building from bundled source...
Building automerge-c...
using Rust package manager: 'cargo 1.91.1 (ea2d97820 2025-10-10) (built from a source tarball)'
using Rust compiler: 'rustc 1.91.1 (ed61e7d7e 2025-11-07) (built from a source tarball)'
Extracting vendored Rust dependencies...
-- The C compiler identification is GNU 14.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc-14 - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Configuring done (0.7s)
-- Generating done (0.0s)
-- Build files have been written to: /home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/am-build
Building (this may take several minutes)...
gmake[1]: Entering directory '/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/am-build'
[ 12%] Producing the bindings' artifacts with Cargo...
-- Touching "/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/src/automerge/rust/automerge-c/cbindgen.toml" if NOT_EXISTS "/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/am-build/include/automerge-c/automerge.h"...
-- Touched "/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/src/automerge/rust/automerge-c/cbindgen.toml".
warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
package: /home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/src/automerge/rust/hexane/Cargo.toml
workspace: /home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/src/automerge/rust/Cargo.toml
Compiling proc-macro2 v1.0.106
Compiling unicode-ident v1.0.24
Compiling quote v1.0.44
Compiling libc v0.2.182
Compiling serde_core v1.0.228
Compiling syn v2.0.116
Compiling typenum v1.19.0
Compiling zmij v1.0.21
Compiling hybrid-array v0.4.7
Compiling serde_json v1.0.149
Compiling serde v1.0.228
Compiling cfg-if v1.0.4
Compiling winnow v0.7.14
Compiling serde_derive v1.0.228
Compiling toml_parser v1.0.9+spec-1.1.0
Compiling toml_datetime v0.7.5+spec-1.1.0
Compiling serde_spanned v1.0.4
Compiling fastrand v1.9.0
Compiling itoa v1.0.17
Compiling crc32fast v1.5.0
Compiling remove_dir_all v0.5.3
Compiling cbindgen v0.29.2
Compiling memchr v2.8.0
Compiling thiserror v2.0.18
Compiling equivalent v1.0.2
Compiling hashbrown v0.16.1
Compiling tempfile v3.3.0
Compiling indexmap v2.13.0
Compiling toml v0.9.12+spec-1.1.0
Compiling thiserror-impl v2.0.18
Compiling crypto-common v0.2.0
Compiling block-buffer v0.11.0
Compiling adler2 v2.0.1
Compiling once_cell v1.21.3
Compiling log v0.4.29
Compiling simd-adler32 v0.3.8
Compiling getrandom v0.3.4
Compiling heck v0.5.0
Compiling miniz_oxide v0.8.9
Compiling tracing-core v0.1.36
Compiling digest v0.11.0
Compiling tracing-attributes v0.1.31
Compiling cpufeatures v0.2.17
Compiling either v1.15.0
Compiling rand_core v0.9.5
Compiling leb128 v0.2.5
Compiling pin-project-lite v0.2.16
Compiling hexane v0.1.7 (/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/src/automerge/rust/hexane)
Compiling tracing v0.1.44
Compiling rand v0.9.2
Compiling itertools v0.14.0
Compiling sha2 v0.11.0-rc.5
Compiling automerge-c v0.3.0 (/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/src/automerge/rust/automerge-c)
Compiling flate2 v1.1.9
Compiling smol_str v0.2.2
Compiling hex v0.4.3
Compiling unicode-segmentation v1.12.0
Compiling rustc-hash v2.1.1
Compiling automerge v0.7.3 (/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/src/automerge/rust/automerge)
Finished `release` profile [optimized] target(s) in 3m 13s
-- Replacing "A_M([^_]+)_" with "AM_\1_" in "/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/am-build/include/automerge-c/automerge.h"...
-- Created/updated "/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/am-build/include/automerge-c/automerge.h".
-- Replacing "USIZE_" with "+8" in "/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/am-build/include/automerge-c/automerge.h"...
-- Created/updated "/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/am-build/include/automerge-c/automerge.h".
[ 12%] Built target automerge_core_artifacts
[ 25%] Generating the enum string functions with CMake...
-- Generating header file "/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/am-build/include/automerge-c/utils/enum_string.h"...
-- Generating source file "/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/am-build/src/utils/enum_string.c"...
[ 37%] Building C object CMakeFiles/automerge.dir/src/utils/result.c.o
[ 50%] Building C object CMakeFiles/automerge.dir/src/utils/stack_callback_data.c.o
[ 62%] Building C object CMakeFiles/automerge.dir/src/utils/stack.c.o
[ 75%] Building C object CMakeFiles/automerge.dir/src/utils/string.c.o
[ 87%] Building C object CMakeFiles/automerge.dir/src/utils/enum_string.c.o
[100%] Linking C static library libautomerge.a
Merging the libraries' constituent object files...
Merging its dependent libraries into /home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/am-build/libautomerge.a...
/usr/bin/ar -x /home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/am-build/Cargo/target/x86_64-unknown-linux-gnu/release/libautomerge_core.a
/usr/bin/ar -rs libautomerge.a objects/automerge_core/*.o
[100%] Built target automerge
gmake[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/am-build'
gmake[1]: Entering directory '/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/am-build'
[ 12%] Built target automerge_core_artifacts
[100%] Built target automerge
Install the project...
-- Install configuration: "Release"
gmake[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/am-build'
Successfully built automerge-c from source
Configuration:
PKG_CFLAGS: -I../am-install/include
PKG_LIBS: ../am-install/lib/libautomerge.a -pthread -ldl -lm -lrt
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-12) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c changes.c -o changes.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cursors.c -o cursors.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c document.c -o document.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c errors.c -o errors.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c memory.c -o memory.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c objects.c -o objects.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sync.c -o sync.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o automerge.so changes.o cursors.o document.o errors.o init.o memory.o objects.o sync.o ../am-install/lib/libautomerge.a -pthread -ldl -lm -lrt -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphcD5lU/R.INSTALL19728c7a98ecbd/automerge/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-automerge/00new/automerge/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘automerge’
finding HTML links ... done
am_apply_changes html
am_change_actor_id html
am_change_deps html
am_change_from_bytes html
am_change_hash html
am_change_message html
am_change_seq html
am_change_size html
am_change_time html
am_change_to_bytes html
am_clone html
am_close html
am_commit html
am_commit_empty html
am_counter html
am_counter_increment html
am_create html
am_cursor html
am_cursor_equal html
am_cursor_from_bytes html
am_cursor_from_string html
am_cursor_position html
am_cursor_to_bytes html
am_cursor_to_string html
am_delete html
am_delete_path html
am_equal html
am_fork html
am_get html
am_get_actor html
am_get_actor_hex html
am_get_change_by_hash html
am_get_changes html
am_get_changes_added html
am_get_heads html
am_get_last_local_change html
am_get_missing_deps html
am_get_path html
am_insert html
am_items html
am_keys html
am_length html
am_list html
am_list_get_all html
am_list_range html
am_load html
am_load_changes html
am_load_incremental html
am_map html
am_map_get_all html
am_map_range html
am_mark html
am_mark_clear html
am_marks html
am_marks_at html
am_merge html
am_pending_ops html
am_put html
am_put_path html
am_rollback html
am_save html
am_save_incremental html
am_set_actor html
am_sync html
am_sync_decode html
am_sync_encode html
am_sync_state html
am_sync_state_decode html
am_sync_state_encode html
am_text html
am_text_content html
am_text_splice html
am_text_update html
am_uint64 html
am_values html
as.character.am_text html
as.list.am_doc html
as.list.am_list html
as.list.am_map html
as.list.am_text html
as_automerge html
automerge-constants html
automerge-package html
extract-am_doc html
extract-am_object html
from_automerge html
length.am_doc html
length.am_object html
names.am_doc html
names.am_map html
print.am_change html
print.am_counter html
print.am_cursor html
print.am_doc html
print.am_list html
print.am_map html
print.am_object html
print.am_syncstate html
print.am_text html
print.am_uint64 html
replace-am_doc html
replace-am_object html
str.am_doc html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (automerge)