* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘automerge’ ...
** this is package ‘automerge’ version ‘0.4.0’
** package ‘automerge’ successfully unpacked and MD5 sums checked
** using staged installation
Checking for system automerge installation...
System automerge not found, building from bundled source...
Building automerge-c...
using Rust package manager: 'cargo 1.95.0 (f2d3ce0bd 2026-03-21) (built from a source tarball)'
using Rust compiler: 'rustc 1.95.0 (59807616e 2026-04-14) (built from a source tarball)'
Extracting vendored Rust dependencies...
-- The C compiler identification is GNU 15.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc-15 - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Configuring done (0.5s)
-- Generating done (0.0s)
-- Build files have been written to: /home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/am-build
Building (this may take several minutes)...
gmake[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/am-build'
[ 12%] Producing the bindings' artifacts with Cargo...
-- Touching "/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/src/automerge/rust/automerge-c/cbindgen.toml" if NOT_EXISTS "/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/am-build/include/automerge-c/automerge.h"...
-- Touched "/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/src/automerge/rust/automerge-c/cbindgen.toml".
warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
package: /home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/src/automerge/rust/hexane/Cargo.toml
workspace: /home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/src/automerge/rust/Cargo.toml
Compiling proc-macro2 v1.0.106
Compiling unicode-ident v1.0.24
Compiling quote v1.0.44
Compiling libc v0.2.182
Compiling serde_core v1.0.228
Compiling syn v2.0.116
Compiling typenum v1.19.0
Compiling zmij v1.0.21
Compiling hybrid-array v0.4.7
Compiling serde_json v1.0.149
Compiling serde v1.0.228
Compiling winnow v0.7.14
Compiling serde_derive v1.0.228
Compiling cfg-if v1.0.4
Compiling toml_parser v1.0.9+spec-1.1.0
Compiling toml_datetime v0.7.5+spec-1.1.0
Compiling serde_spanned v1.0.4
Compiling equivalent v1.0.2
Compiling remove_dir_all v0.5.3
Compiling crc32fast v1.5.0
Compiling fastrand v1.9.0
Compiling cbindgen v0.29.2
Compiling memchr v2.8.0
Compiling thiserror v2.0.18
Compiling hashbrown v0.16.1
Compiling itoa v1.0.17
Compiling tempfile v3.3.0
Compiling indexmap v2.13.0
Compiling toml v0.9.12+spec-1.1.0
Compiling thiserror-impl v2.0.18
Compiling block-buffer v0.11.0
Compiling crypto-common v0.2.0
Compiling log v0.4.29
Compiling getrandom v0.3.4
Compiling heck v0.5.0
Compiling adler2 v2.0.1
Compiling simd-adler32 v0.3.8
Compiling once_cell v1.21.3
Compiling miniz_oxide v0.8.9
Compiling tracing-core v0.1.36
Compiling digest v0.11.0
Compiling tracing-attributes v0.1.31
Compiling rand_core v0.9.5
Compiling cpufeatures v0.2.17
Compiling pin-project-lite v0.2.16
Compiling either v1.15.0
Compiling leb128 v0.2.5
Compiling hexane v0.1.7 (/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/src/automerge/rust/hexane)
Compiling automerge-c v0.3.0 (/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/src/automerge/rust/automerge-c)
Compiling itertools v0.14.0
Compiling tracing v0.1.44
Compiling sha2 v0.11.0-rc.5
Compiling rand v0.9.2
Compiling flate2 v1.1.9
Compiling smol_str v0.2.2
Compiling rustc-hash v2.1.1
Compiling hex v0.4.3
Compiling unicode-segmentation v1.12.0
Compiling automerge v0.7.3 (/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/src/automerge/rust/automerge)
warning: unused import: `to_expand_mark`
--> automerge-c/src/doc/mark.rs:32:16
|
32 | pub(crate) use to_expand_mark;
| ^^^^^^^^^^^^^^
|
= note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
warning: unused import: `to_sync_state`
--> automerge-c/src/sync/state.rs:18:16
|
18 | pub(crate) use to_sync_state;
| ^^^^^^^^^^^^^
warning: `automerge-c` (lib) generated 2 warnings (run `cargo fix --lib -p automerge-c` to apply 2 suggestions)
Finished `release` profile [optimized] target(s) in 3m 00s
-- Replacing "A_M([^_]+)_" with "AM_\1_" in "/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/am-build/include/automerge-c/automerge.h"...
-- Created/updated "/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/am-build/include/automerge-c/automerge.h".
-- Replacing "USIZE_" with "+8" in "/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/am-build/include/automerge-c/automerge.h"...
-- Created/updated "/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/am-build/include/automerge-c/automerge.h".
[ 12%] Built target automerge_core_artifacts
[ 25%] Generating the enum string functions with CMake...
-- Generating header file "/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/am-build/include/automerge-c/utils/enum_string.h"...
-- Generating source file "/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/am-build/src/utils/enum_string.c"...
[ 37%] Building C object CMakeFiles/automerge.dir/src/utils/result.c.o
[ 50%] Building C object CMakeFiles/automerge.dir/src/utils/stack_callback_data.c.o
[ 62%] Building C object CMakeFiles/automerge.dir/src/utils/stack.c.o
[ 75%] Building C object CMakeFiles/automerge.dir/src/utils/string.c.o
[ 87%] Building C object CMakeFiles/automerge.dir/src/utils/enum_string.c.o
[100%] Linking C static library libautomerge.a
Merging the libraries' constituent object files...
Merging its dependent libraries into /home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/am-build/libautomerge.a...
/usr/bin/ar -x /home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/am-build/Cargo/target/x86_64-unknown-linux-gnu/release/libautomerge_core.a
/usr/bin/ar -rs libautomerge.a objects/automerge_core/*.o
[100%] Built target automerge
gmake[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/am-build'
gmake[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/am-build'
[ 12%] Built target automerge_core_artifacts
[100%] Built target automerge
Install the project...
-- Install configuration: "Release"
gmake[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/am-build'
Successfully built automerge-c from source
Configuration:
PKG_CFLAGS: -I../am-install/include
PKG_LIBS: ../am-install/lib/libautomerge.a -pthread -ldl -lm -lrt
** libs
using C compiler: ‘gcc-15 (Debian 15.3.0-1) 15.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/src'
gcc-15 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c changes.c -o changes.o
gcc-15 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cursors.c -o cursors.o
gcc-15 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c document.c -o document.o
gcc-15 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c errors.c -o errors.o
gcc-15 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-15 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c memory.c -o memory.o
gcc-15 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c objects.c -o objects.o
gcc-15 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sync.c -o sync.o
gcc-15 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o automerge.so changes.o cursors.o document.o errors.o init.o memory.o objects.o sync.o ../am-install/lib/libautomerge.a -pthread -ldl -lm -lrt -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRWeeKG/R.INSTALL1c0328581d326c/automerge/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-automerge/00new/automerge/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘automerge’
finding HTML links ... done
am_apply_changes html
am_change_actor_id html
am_change_deps html
am_change_from_bytes html
am_change_hash html
am_change_message html
am_change_seq html
am_change_size html
am_change_time html
am_change_to_bytes html
am_clone html
am_close html
am_commit html
am_commit_empty html
am_counter html
am_counter_increment html
am_create html
am_cursor html
am_cursor_equal html
am_cursor_from_bytes html
am_cursor_from_string html
am_cursor_position html
am_cursor_to_bytes html
am_cursor_to_string html
am_delete html
am_delete_path html
am_equal html
am_fork html
am_get html
am_get_actor html
am_get_actor_hex html
am_get_change_by_hash html
am_get_changes html
am_get_changes_added html
am_get_heads html
am_get_last_local_change html
am_get_missing_deps html
am_get_path html
am_insert html
am_items html
am_keys html
am_length html
am_list html
am_list_get_all html
am_list_range html
am_load html
am_load_changes html
am_load_incremental html
am_map html
am_map_get_all html
am_map_range html
am_mark html
am_mark_clear html
am_marks html
am_marks_at html
am_merge html
am_pending_ops html
am_put html
am_put_path html
am_rollback html
am_save html
am_save_incremental html
am_set_actor html
am_sync html
am_sync_decode html
am_sync_encode html
am_sync_state html
am_sync_state_decode html
am_sync_state_encode html
am_text html
am_text_content html
am_text_splice html
am_text_update html
am_uint64 html
am_values html
as.character.am_text html
as.list.am_doc html
as.list.am_list html
as.list.am_map html
as.list.am_text html
as_automerge html
automerge-constants html
automerge-package html
extract-am_doc html
extract-am_object html
from_automerge html
length.am_doc html
length.am_object html
names.am_doc html
names.am_map html
print.am_change html
print.am_counter html
print.am_cursor html
print.am_doc html
print.am_list html
print.am_map html
print.am_object html
print.am_syncstate html
print.am_text html
print.am_uint64 html
replace-am_doc html
replace-am_object html
str.am_doc html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (automerge)