* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘automerge’ ...
** this is package ‘automerge’ version ‘0.2.0’
** package ‘automerge’ successfully unpacked and MD5 sums checked
** using staged installation
Checking for system automerge installation...
System automerge not found, building from bundled source...
Building automerge-c...
using Rust package manager: 'cargo 1.91.1 (ea2d97820 2025-10-10) (built from a source tarball)'
using Rust compiler: 'rustc 1.91.1 (ed61e7d7e 2025-11-07) (built from a source tarball)'
Extracting vendored Rust dependencies...
-- The C compiler identification is GNU 14.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc-14 - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Configuring done (1.0s)
-- Generating done (0.0s)
-- Build files have been written to: /home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/am-build
Building (this may take several minutes)...
gmake[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/am-build'
[ 12%] Producing the bindings' artifacts with Cargo...
-- Touching "/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/src/automerge/rust/automerge-c/cbindgen.toml" if NOT_EXISTS "/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/am-build/include/automerge-c/automerge.h"...
-- Touched "/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/src/automerge/rust/automerge-c/cbindgen.toml".
warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
package: /home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/src/automerge/rust/hexane/Cargo.toml
workspace: /home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/src/automerge/rust/Cargo.toml
Compiling proc-macro2 v1.0.106
Compiling unicode-ident v1.0.22
Compiling quote v1.0.43
Compiling serde_core v1.0.228
Compiling serde v1.0.228
Compiling libc v0.2.180
Compiling version_check v0.9.5
Compiling syn v2.0.114
Compiling cfg-if v1.0.4
Compiling typenum v1.19.0
Compiling generic-array v0.14.7
Compiling autocfg v1.5.0
Compiling indexmap v1.9.3
Compiling serde_derive v1.0.228
Compiling zmij v1.0.16
Compiling rustix v1.1.3
Compiling zerocopy v0.8.33
Compiling getrandom v0.3.4
Compiling linux-raw-sys v0.11.0
Compiling bitflags v2.10.0
Compiling hashbrown v0.12.3
Compiling serde_json v1.0.149
Compiling os_str_bytes v6.6.1
Compiling syn v1.0.109
Compiling clap_lex v0.2.4
Compiling getrandom v0.2.17
Compiling atty v0.2.14
Compiling once_cell v1.21.3
Compiling itoa v1.0.17
Compiling fastrand v2.3.0
Compiling termcolor v1.4.1
Compiling textwrap v0.16.2
Compiling strsim v0.10.0
Compiling cbindgen v0.26.0
Compiling bitflags v1.3.2
Compiling thiserror v2.0.18
Compiling memchr v2.7.6
Compiling crc32fast v1.5.0
Compiling clap v3.2.25
Compiling ppv-lite86 v0.2.21
Compiling tempfile v3.24.0
Compiling rand_core v0.6.4
Compiling toml v0.5.11
Compiling crypto-common v0.1.7
Compiling block-buffer v0.10.4
Compiling thiserror-impl v2.0.18
Compiling log v0.4.29
Compiling heck v0.4.1
Compiling adler2 v2.0.1
Compiling simd-adler32 v0.3.8
Compiling tracing-core v0.1.36
Compiling miniz_oxide v0.8.9
Compiling digest v0.10.7
Compiling rand_chacha v0.3.1
Compiling tracing-attributes v0.1.31
Compiling leb128 v0.2.5
Compiling either v1.15.0
Compiling cpufeatures v0.2.17
Compiling pin-project-lite v0.2.16
Compiling tinyvec_macros v0.1.1
Compiling tinyvec v1.10.0
Compiling automerge-c v0.3.0 (/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/src/automerge/rust/automerge-c)
Compiling tracing v0.1.44
Compiling sha2 v0.10.9
Compiling itertools v0.14.0
Compiling hexane v0.1.7 (/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/src/automerge/rust/hexane)
Compiling flate2 v1.1.8
Compiling rand v0.8.5
Compiling smol_str v0.2.2
Compiling unicode-segmentation v1.12.0
Compiling hex v0.4.3
Compiling rustc-hash v2.1.1
Compiling automerge v0.7.3 (/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/src/automerge/rust/automerge)
Finished `release` profile [optimized] target(s) in 3m 26s
-- Replacing "A_M([^_]+)_" with "AM_\1_" in "/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/am-build/include/automerge-c/automerge.h"...
-- Created/updated "/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/am-build/include/automerge-c/automerge.h".
-- Replacing "USIZE_" with "+8" in "/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/am-build/include/automerge-c/automerge.h"...
-- Created/updated "/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/am-build/include/automerge-c/automerge.h".
[ 12%] Built target automerge_core_artifacts
[ 25%] Generating the enum string functions with CMake...
-- Generating header file "/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/am-build/include/automerge-c/utils/enum_string.h"...
-- Generating source file "/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/am-build/src/utils/enum_string.c"...
[ 37%] Building C object CMakeFiles/automerge.dir/src/utils/result.c.o
[ 50%] Building C object CMakeFiles/automerge.dir/src/utils/stack_callback_data.c.o
[ 62%] Building C object CMakeFiles/automerge.dir/src/utils/stack.c.o
[ 75%] Building C object CMakeFiles/automerge.dir/src/utils/string.c.o
[ 87%] Building C object CMakeFiles/automerge.dir/src/utils/enum_string.c.o
[100%] Linking C static library libautomerge.a
Merging the libraries' constituent object files...
Merging its dependent libraries into /home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/am-build/libautomerge.a...
/usr/bin/ar -x /home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/am-build/Cargo/target/x86_64-unknown-linux-gnu/release/libautomerge_core.a
/usr/bin/ar -rs libautomerge.a objects/automerge_core/*.o
[100%] Built target automerge
gmake[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/am-build'
gmake[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/am-build'
[ 12%] Built target automerge_core_artifacts
[100%] Built target automerge
Install the project...
-- Install configuration: "Release"
gmake[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/am-build'
Successfully built automerge-c from source
Configuration:
PKG_CFLAGS: -I../am-install/include
PKG_LIBS: ../am-install/lib/libautomerge.a -pthread -ldl -lm -lrt
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cursors.c -o cursors.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c document.c -o document.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c errors.c -o errors.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c memory.c -o memory.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c objects.c -o objects.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../am-install/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sync.c -o sync.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o automerge.so cursors.o document.o errors.o init.o memory.o objects.o sync.o ../am-install/lib/libautomerge.a -pthread -ldl -lm -lrt -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNz3qsK/R.INSTALL3d47513e067d95/automerge/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-automerge/00new/automerge/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘automerge’
finding HTML links ... done
am_apply_changes html
am_commit html
am_counter html
am_counter_increment html
am_create html
am_cursor html
am_cursor_position html
am_delete html
am_delete_path html
am_fork html
am_get html
am_get_actor html
am_get_actor_hex html
am_get_change_by_hash html
am_get_changes html
am_get_changes_added html
am_get_heads html
am_get_history html
am_get_last_local_change html
am_get_path html
am_insert html
am_keys html
am_length html
am_list html
am_load html
am_map html
am_mark html
am_marks html
am_marks_at html
am_merge html
am_put html
am_put_path html
am_rollback html
am_save html
am_set_actor html
am_sync html
am_sync_decode html
am_sync_encode html
am_sync_state_new html
am_text html
am_text_content html
am_text_splice html
am_text_update html
am_uint64 html
am_values html
as.character.am_text html
as.list.am_doc html
as.list.am_list html
as.list.am_map html
as.list.am_text html
as_automerge html
automerge-constants html
automerge-package html
extract-am_doc html
extract-am_object html
from_automerge html
length.am_doc html
length.am_object html
names.am_doc html
names.am_map html
print.am_counter html
print.am_cursor html
print.am_doc html
print.am_list html
print.am_map html
print.am_object html
print.am_syncstate html
print.am_text html
print.am_uint64 html
replace-am_doc html
replace-am_object html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (automerge)