* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘astrochron’ ...
** package ‘astrochron’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpWiieEJ/R.INSTALL98266c6f18bf/astrochron/src'
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c EHA_Rv6e.f -o EHA_Rv6e.o
EHA_Rv6e.f:66:42:

   66 |       dimension dg(mxdata),spw(mxdpss),dcf(mxdpss,mxdata)
      |                                          1
Warning: Array ‘dcf’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:66:18:

   66 |       dimension dg(mxdata),spw(mxdpss),dcf(mxdpss,mxdata)
      |                  1
Warning: Array ‘dg’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:60:44:

   60 |       dimension u10(mxdpss),u20(mxdpss),dpss(mxdata,mxdpss),
      |                                            1
Warning: Array ‘dpss’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:68:17:

   68 |       dimension x(mxdata),y(mxdata),x1(mxdpss,mxdata),y1(mxdpss,mxdata)
      |                 1
Warning: Array ‘x’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:68:38:

   68 |       dimension x(mxdata),y(mxdata),x1(mxdpss,mxdata),y1(mxdpss,mxdata)
      |                                      1
Warning: Array ‘x1’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:58:18:

   58 |       dimension xx(mxdata),yy(mxdata)
      |                  1
Warning: Array ‘xx’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:68:27:

   68 |       dimension x(mxdata),y(mxdata),x1(mxdpss,mxdata),y1(mxdpss,mxdata)
      |                           1
Warning: Array ‘y’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:68:56:

   68 |       dimension x(mxdata),y(mxdata),x1(mxdpss,mxdata),y1(mxdpss,mxdata)
      |                                                        1
Warning: Array ‘y1’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:58:29:

   58 |       dimension xx(mxdata),yy(mxdata)
      |                             1
Warning: Array ‘yy’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Impulse_Response_v2.c -o Impulse_Response_v2.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Root_Search_v2.c -o Root_Search_v2.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c asm1.8cR.f -o asm1.8cR.o
asm1.8cR.f:244:17:

  244 |            ife = DINT(fe)
      |                 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
asm1.8cR.f:31:34:

   31 |       dimension rAsm(mxsr),saveAsm(mxsr,mxdata)
      |                                  1
Warning: Array ‘saveasm’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
asm1.8cR.f:33:21:

   33 |       dimension store(mxdata),sedrate(mxsr),temp(mxsr)
      |                     1
Warning: Array ‘store’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
asm1.8cR.f:428:72:

  428 |            freqTmin = freqT(locfit) - (0.5d0*resol2)
      |                                                                        ^
Warning: ‘resol2’ may be used uninitialized [-Wmaybe-uninitialized]
asm1.8cR.f:385:29:

  385 |          if(ires.eq.1) resol2 = resol
      |                             ^
note: ‘resol2’ was declared here
asm1.8cR.f:428:72:

  428 |            freqTmin = freqT(locfit) - (0.5d0*resol2)
      |                                                                        ^
Warning: ‘locfit’ may be used uninitialized [-Wmaybe-uninitialized]
asm1.8cR.f:416:21:

  416 |                locfit=k
      |                     ^
note: ‘locfit’ was declared here
asm1.8cR.f:87:36:

   87 |       if(sedrate(1).lt.berSedmin.or.sedrate(numsed).gt.
      |                                    ^
Warning: ‘sedrate’ may be used uninitialized [-Wmaybe-uninitialized]
asm1.8cR.f:33:37:

   33 |       dimension store(mxdata),sedrate(mxsr),temp(mxsr)
      |                                     ^
note: ‘sedrate’ declared here
asm1.8cR.f:106:72:

  106 |          sedmax=sedmaxNew
      |                                                                        ^
Warning: ‘sedmaxnew’ may be used uninitialized [-Wmaybe-uninitialized]
asm1.8cR.f:98:25:

   98 |                 sedmaxNew=sedrate(i)
      |                         ^
note: ‘sedmaxnew’ was declared here
asm1.8cR.f:105:72:

  105 |          sedmin=sedminNew
      |                                                                        ^
Warning: ‘sedminnew’ may be used uninitialized [-Wmaybe-uninitialized]
asm1.8cR.f:94:25:

   94 |                 sedminNew=sedrate(i)
      |                         ^
note: ‘sedminnew’ was declared here
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c demean_v3.f -o demean_v3.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c detrend_v3.f -o detrend_v3.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c dlasrtastro_v2.f -o dlasrtastro_v2.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c dupmean_v3_R.f -o dupmean_v3_R.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c getunif.c -o getunif.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c mwinGrid_R.f -o mwinGrid_R.o
mwinGrid_R.f:52:72:

   52 |          n2(k)=iout
      |                                                                        ^
Warning: ‘iout’ may be used uninitialized [-Wmaybe-uninitialized]
mwinGrid_R.f:49:35:

   49 |             if(x(i).le.winend) iout=i
      |                                   ^
note: ‘iout’ was declared here
mwinGrid_R.f:51:72:

   51 |          n1(k)=iin
      |                                                                        ^
Warning: ‘iin’ may be used uninitialized [-Wmaybe-uninitialized]
mwinGrid_R.f:45:36:

   45 |             if(x(i).ge.winstart) iin=i
      |                                    ^
note: ‘iin’ was declared here
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c mwin_R_v4.f -o mwin_R_v4.o
mwin_R_v4.f:72:72:

   72 |          midx2(i)= xhold - ( (xhold-x(i))/2.d0 )
      |                                                                        ^
Warning: ‘xhold’ may be used uninitialized [-Wmaybe-uninitialized]
mwin_R_v4.f:61:16:

   61 |            xhold=x(j)
      |                ^
note: ‘xhold’ was declared here
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c mwincenter_R_v4.f -o mwincenter_R_v4.o
mwincenter_R_v4.f:54:72:

   54 |       npts=iend-istart+1
      |                                                                        ^
Warning: ‘iend’ may be used uninitialized [-Wmaybe-uninitialized]
mwincenter_R_v4.f:50:56:

   50 |         if(x(i) - (x(ipts)-winsize/2.d0) .le. epsm) iend=i
      |                                                        ^
note: ‘iend’ was declared here
mwincenter_R_v4.f:54:72:

   54 |       npts=iend-istart+1
      |                                                                        ^
Warning: ‘istart’ may be used uninitialized [-Wmaybe-uninitialized]
mwincenter_R_v4.f:45:60:

   45 |          if( (x(i)-winsize/2.d0) - x(1) .ge. -1*epsm) istart=i
      |                                                            ^
note: ‘istart’ was declared here
mwincenter_R_v4.f:66:72:

   66 |          n1(k) = iin
      |                                                                        ^
Warning: ‘iin’ may be used uninitialized [-Wmaybe-uninitialized]
mwincenter_R_v4.f:64:45:

   64 |            if(x(j)-winstart. ge. -1*epsm) iin=j
      |                                             ^
note: ‘iin’ was declared here
mwincenter_R_v4.f:71:72:

   71 |          n2(k)=iout
      |                                                                        ^
Warning: ‘iout’ may be used uninitialized [-Wmaybe-uninitialized]
mwincenter_R_v4.f:69:41:

   69 |            if(x(j)-winend .le. epsm) iout=j
      |                                         ^
note: ‘iout’ was declared here
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c pad_v2.f -o pad_v2.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c peak_v2_R.f -o peak_v2_R.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c peakfilter_R.f -o peakfilter_R.o
peakfilter_R.f:5:23:

    5 |      &  freqloc,probmax,freq,background,pwr,cl,loc,nout)
      |                       1
Warning: Unused dummy argument ‘probmax’ at (1) [-Wunused-dummy-argument]
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c singleton_v3.f -o singleton_v3.o
singleton_v3.f:231:8:

  231 |       K3=K2+KSPAN
      |        ^
Warning: ‘k3’ may be used uninitialized [-Wmaybe-uninitialized]
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c trough_v2_R.f -o trough_v2_R.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c tune_v2_R.f -o tune_v2_R.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o astrochron.so EHA_Rv6e.o Impulse_Response_v2.o Root_Search_v2.o asm1.8cR.o demean_v3.o detrend_v3.o dlasrtastro_v2.o dupmean_v3_R.o getunif.o init.o mwinGrid_R.o mwin_R_v4.o mwincenter_R_v4.o pad_v2.o peak_v2_R.o peakfilter_R.o singleton_v3.o trough_v2_R.o tune_v2_R.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpWiieEJ/R.INSTALL98266c6f18bf/astrochron/src'
make[1]: Entering directory '/tmp/RtmpWiieEJ/R.INSTALL98266c6f18bf/astrochron/src'
make[1]: Leaving directory '/tmp/RtmpWiieEJ/R.INSTALL98266c6f18bf/astrochron/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-astrochron/00new/astrochron/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘astrochron’
    finding HTML links ... done
    anchorTime                              html  
    ar1                                     html  
    ar1etp                                  html  
    arcsinT                                 html  
    armaGen                                 html  
    asm                                     html  
    astrochron-package                      html  
    autoPlot                                html  
    bandpass                                html  
    bergerPeriods                           html  
    bicoherence                             html  
    bioturb                                 html  
    calcPeriods                             html  
    cb                                      html  
    clipIt                                  html  
    confAdjust                              html  
    finding level-2 HTML links ... done

    constantSedrate                         html  
    conv_fft                                html  
    cosTaper                                html  
    cycles                                  html  
    deconv                                  html  
    delPts                                  html  
    demean                                  html  
    detrend                                 html  
    diffAccum                               html  
    divTrend                                html  
    dpssTaper                               html  
    eAsm                                    html  
    eAsmTrack                               html  
    eTimeOpt                                html  
    eTimeOptTrack                           html  
    eha                                     html  
    etp                                     html  
    extract                                 html  
    flip                                    html  
    freq2sedrate                            html  
    gausTaper                               html  
    getColor                                html  
    getData                                 html  
    getLaskar                               html  
    hannTaper                               html  
    headn                                   html  
    hilbert                                 html  
    idPts                                   html  
    imbrie                                  html  
    impulseResponse                         html  
    insoDiff                                html  
    insoMap                                 html  
    insoSeries                              html  
    integratePower                          html  
    iso                                     html  
    linage                                  html  
    linterp                                 html  
    logT                                    html  
    lowpass                                 html  
    lowspec                                 html  
    makeNoise                               html  
    modelA                                  html  
    mtm                                     html  
    mtmAR                                   html  
    mtmML96                                 html  
    mtmPL                                   html  
    multiTest                               html  
    mwCor                                   html  
    mwMinMax                                html  
    mwStats                                 html  
    mwStatsGrid                             html  
    mwin                                    html  
    mwinGrid                                html  
    noKernel                                html  
    noLow                                   html  
    pad                                     html  
    peak                                    html  
    periodogram                             html  
    pl                                      html  
    plS                                     html  
    plotEha                                 html  
    prewhiteAR                              html  
    prewhiteAR1                             html  
    pwrLaw                                  html  
    pwrLawFit                               html  
    rankSeries                              html  
    read                                    html  
    readMatrix                              html  
    repl0                                   html  
    replEps                                 html  
    resample                                html  
    rmNA                                    html  
    s                                       html  
    sedRamp                                 html  
    sedrate2time                            html  
    slideCor                                html  
    sortNave                                html  
    stepHeat                                html  
    strats                                  html  
    surrogateCor                            html  
    surrogates                              html  
    synthStrat                              html  
    taner                                   html  
    tanerFFT                                html  
    testBackground                          html  
    testPrecession                          html  
    testTilt                                html  
    timeOpt                                 html  
    timeOptMCMC                             html  
    timeOptPlot                             html  
    timeOptSim                              html  
    timeOptSimPwrLaw                        html  
    timeOptTemplate                         html  
    timeOptTemplatePlot                     html  
    timeOptTemplateSim                      html  
    tones                                   html  
    traceFreq                               html  
    tracePeak                               html  
    trackFreq                               html  
    trackPeak                               html  
    trim                                    html  
    trimAT                                  html  
    trough                                  html  
    tune                                    html  
    unbioturb                               html  
    writeCSV                                html  
    writeT                                  html  
    wtMean                                  html  
    xplot                                   html  
    zoomIn                                  html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (astrochron)