* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘astrochron’ ...
** package ‘astrochron’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmphtwhZa/R.INSTALL2c35eb60fd7763/astrochron/src'
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c EHA_Rv6e.f -o EHA_Rv6e.o
EHA_Rv6e.f:66:42:
66 | dimension dg(mxdata),spw(mxdpss),dcf(mxdpss,mxdata)
| 1
Warning: Array ‘dcf’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:66:18:
66 | dimension dg(mxdata),spw(mxdpss),dcf(mxdpss,mxdata)
| 1
Warning: Array ‘dg’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:60:44:
60 | dimension u10(mxdpss),u20(mxdpss),dpss(mxdata,mxdpss),
| 1
Warning: Array ‘dpss’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:68:17:
68 | dimension x(mxdata),y(mxdata),x1(mxdpss,mxdata),y1(mxdpss,mxdata)
| 1
Warning: Array ‘x’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:68:38:
68 | dimension x(mxdata),y(mxdata),x1(mxdpss,mxdata),y1(mxdpss,mxdata)
| 1
Warning: Array ‘x1’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:58:18:
58 | dimension xx(mxdata),yy(mxdata)
| 1
Warning: Array ‘xx’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:68:27:
68 | dimension x(mxdata),y(mxdata),x1(mxdpss,mxdata),y1(mxdpss,mxdata)
| 1
Warning: Array ‘y’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:68:56:
68 | dimension x(mxdata),y(mxdata),x1(mxdpss,mxdata),y1(mxdpss,mxdata)
| 1
Warning: Array ‘y1’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:58:29:
58 | dimension xx(mxdata),yy(mxdata)
| 1
Warning: Array ‘yy’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Impulse_Response_v2.c -o Impulse_Response_v2.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Root_Search_v2.c -o Root_Search_v2.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c asm1.8cR.f -o asm1.8cR.o
asm1.8cR.f:244:17:
244 | ife = DINT(fe)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
asm1.8cR.f:31:34:
31 | dimension rAsm(mxsr),saveAsm(mxsr,mxdata)
| 1
Warning: Array ‘saveasm’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
asm1.8cR.f:33:21:
33 | dimension store(mxdata),sedrate(mxsr),temp(mxsr)
| 1
Warning: Array ‘store’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
asm1.8cR.f:428:72:
428 | freqTmin = freqT(locfit) - (0.5d0*resol2)
| ^
Warning: ‘resol2’ may be used uninitialized [-Wmaybe-uninitialized]
asm1.8cR.f:385:29:
385 | if(ires.eq.1) resol2 = resol
| ^
note: ‘resol2’ was declared here
asm1.8cR.f:428:72:
428 | freqTmin = freqT(locfit) - (0.5d0*resol2)
| ^
Warning: ‘locfit’ may be used uninitialized [-Wmaybe-uninitialized]
asm1.8cR.f:416:21:
416 | locfit=k
| ^
note: ‘locfit’ was declared here
asm1.8cR.f:87:36:
87 | if(sedrate(1).lt.berSedmin.or.sedrate(numsed).gt.
| ^
Warning: ‘sedrate’ may be used uninitialized [-Wmaybe-uninitialized]
asm1.8cR.f:33:37:
33 | dimension store(mxdata),sedrate(mxsr),temp(mxsr)
| ^
note: ‘sedrate’ declared here
asm1.8cR.f:106:72:
106 | sedmax=sedmaxNew
| ^
Warning: ‘sedmaxnew’ may be used uninitialized [-Wmaybe-uninitialized]
asm1.8cR.f:98:25:
98 | sedmaxNew=sedrate(i)
| ^
note: ‘sedmaxnew’ was declared here
asm1.8cR.f:105:72:
105 | sedmin=sedminNew
| ^
Warning: ‘sedminnew’ may be used uninitialized [-Wmaybe-uninitialized]
asm1.8cR.f:94:25:
94 | sedminNew=sedrate(i)
| ^
note: ‘sedminnew’ was declared here
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c demean_v3.f -o demean_v3.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c detrend_v3.f -o detrend_v3.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c dlasrtastro_v2.f -o dlasrtastro_v2.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c dupmean_v3_R.f -o dupmean_v3_R.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getunif.c -o getunif.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c mwinGrid_R.f -o mwinGrid_R.o
mwinGrid_R.f:52:72:
52 | n2(k)=iout
| ^
Warning: ‘iout’ may be used uninitialized [-Wmaybe-uninitialized]
mwinGrid_R.f:49:35:
49 | if(x(i).le.winend) iout=i
| ^
note: ‘iout’ was declared here
mwinGrid_R.f:51:72:
51 | n1(k)=iin
| ^
Warning: ‘iin’ may be used uninitialized [-Wmaybe-uninitialized]
mwinGrid_R.f:45:36:
45 | if(x(i).ge.winstart) iin=i
| ^
note: ‘iin’ was declared here
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c mwin_R_v4.f -o mwin_R_v4.o
mwin_R_v4.f:72:72:
72 | midx2(i)= xhold - ( (xhold-x(i))/2.d0 )
| ^
Warning: ‘xhold’ may be used uninitialized [-Wmaybe-uninitialized]
mwin_R_v4.f:61:16:
61 | xhold=x(j)
| ^
note: ‘xhold’ was declared here
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c mwincenter_R_v4.f -o mwincenter_R_v4.o
mwincenter_R_v4.f:54:72:
54 | npts=iend-istart+1
| ^
Warning: ‘iend’ may be used uninitialized [-Wmaybe-uninitialized]
mwincenter_R_v4.f:50:56:
50 | if(x(i) - (x(ipts)-winsize/2.d0) .le. epsm) iend=i
| ^
note: ‘iend’ was declared here
mwincenter_R_v4.f:54:72:
54 | npts=iend-istart+1
| ^
Warning: ‘istart’ may be used uninitialized [-Wmaybe-uninitialized]
mwincenter_R_v4.f:45:60:
45 | if( (x(i)-winsize/2.d0) - x(1) .ge. -1*epsm) istart=i
| ^
note: ‘istart’ was declared here
mwincenter_R_v4.f:66:72:
66 | n1(k) = iin
| ^
Warning: ‘iin’ may be used uninitialized [-Wmaybe-uninitialized]
mwincenter_R_v4.f:64:45:
64 | if(x(j)-winstart. ge. -1*epsm) iin=j
| ^
note: ‘iin’ was declared here
mwincenter_R_v4.f:71:72:
71 | n2(k)=iout
| ^
Warning: ‘iout’ may be used uninitialized [-Wmaybe-uninitialized]
mwincenter_R_v4.f:69:41:
69 | if(x(j)-winend .le. epsm) iout=j
| ^
note: ‘iout’ was declared here
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c pad_v2.f -o pad_v2.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c peak_v2_R.f -o peak_v2_R.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c peakfilter_R.f -o peakfilter_R.o
peakfilter_R.f:5:23:
5 | & freqloc,probmax,freq,background,pwr,cl,loc,nout)
| 1
Warning: Unused dummy argument ‘probmax’ at (1) [-Wunused-dummy-argument]
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c singleton_v3.f -o singleton_v3.o
singleton_v3.f:231:8:
231 | K3=K2+KSPAN
| ^
Warning: ‘k3’ may be used uninitialized [-Wmaybe-uninitialized]
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c trough_v2_R.f -o trough_v2_R.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c tune_v2_R.f -o tune_v2_R.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o astrochron.so EHA_Rv6e.o Impulse_Response_v2.o Root_Search_v2.o asm1.8cR.o demean_v3.o detrend_v3.o dlasrtastro_v2.o dupmean_v3_R.o getunif.o init.o mwinGrid_R.o mwin_R_v4.o mwincenter_R_v4.o pad_v2.o peak_v2_R.o peakfilter_R.o singleton_v3.o trough_v2_R.o tune_v2_R.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmphtwhZa/R.INSTALL2c35eb60fd7763/astrochron/src'
make[1]: Entering directory '/tmp/RtmphtwhZa/R.INSTALL2c35eb60fd7763/astrochron/src'
make[1]: Leaving directory '/tmp/RtmphtwhZa/R.INSTALL2c35eb60fd7763/astrochron/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-astrochron/00new/astrochron/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘astrochron’
finding HTML links ... done
anchorTime html
ar1 html
ar1etp html
arcsinT html
armaGen html
asm html
astrochron-package html
autoPlot html
bandpass html
bergerPeriods html
bicoherence html
bioturb html
calcPeriods html
cb html
clipIt html
confAdjust html
finding level-2 HTML links ... done
constantSedrate html
conv_fft html
cosTaper html
cycles html
deconv html
delPts html
demean html
detrend html
diffAccum html
divTrend html
dpssTaper html
eAsm html
eAsmTrack html
eTimeOpt html
eTimeOptTrack html
eha html
etp html
extract html
flip html
freq2sedrate html
gausTaper html
getColor html
getData html
getLaskar html
hannTaper html
headn html
hilbert html
idPts html
imbrie html
impulseResponse html
insoDiff html
insoMap html
insoSeries html
integratePower html
iso html
linage html
linterp html
logT html
lowpass html
lowspec html
makeNoise html
modelA html
mtm html
mtmAR html
mtmML96 html
mtmPL html
multiTest html
mwCor html
mwMinMax html
mwStats html
mwStatsGrid html
mwin html
mwinGrid html
noKernel html
noLow html
pad html
peak html
periodogram html
pl html
plS html
plotEha html
prewhiteAR html
prewhiteAR1 html
pwrLaw html
pwrLawFit html
rankSeries html
read html
readMatrix html
repl0 html
replEps html
resample html
rmNA html
s html
sedRamp html
sedrate2time html
slideCor html
sortNave html
stepHeat html
strats html
surrogateCor html
surrogates html
synthStrat html
taner html
tanerFFT html
testBackground html
testPrecession html
testTilt html
timeOpt html
timeOptMCMC html
timeOptPlot html
timeOptSim html
timeOptSimPwrLaw html
timeOptTemplate html
timeOptTemplatePlot html
timeOptTemplateSim html
tones html
traceFreq html
tracePeak html
trackFreq html
trackPeak html
trim html
trimAT html
trough html
tune html
unbioturb html
writeCSV html
writeT html
wtMean html
xplot html
zoomIn html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (astrochron)