* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ashr’ ...
** package ‘ashr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmptPK58Q/R.INSTALL2ebcfd451122ed/ashr/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MixSquarem.cpp -o MixSquarem.o
In file included from /usr/include/c++/13/bits/specfun.h:43,
from /usr/include/c++/13/cmath:3699,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/platform/compiler.h:100,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/r/headers.h:62,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:30,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp.h:27,
from MixSquarem.cpp:1:
In function ‘constexpr const _Tp& std::min(const _Tp&, const _Tp&) [with _Tp = double]’,
inlined from ‘Rcpp::List squarem1(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::List)’ at MixSquarem.cpp:137:23:
/usr/include/c++/13/bits/stl_algobase.h:238:7: warning: ‘alpha’ may be used uninitialized [-Wmaybe-uninitialized]
238 | if (__b < __a)
| ^~
MixSquarem.cpp: In function ‘Rcpp::List squarem1(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::List)’:
MixSquarem.cpp:65:56: note: ‘alpha’ was declared here
65 | double sr2_scalar,sq2_scalar,sv2_scalar,srv_scalar,alpha,stepmin,stepmax;
| ^~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ashr.so MixSquarem.o RcppExports.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmptPK58Q/R.INSTALL2ebcfd451122ed/ashr/src'
make[1]: Entering directory '/tmp/RtmptPK58Q/R.INSTALL2ebcfd451122ed/ashr/src'
make[1]: Leaving directory '/tmp/RtmptPK58Q/R.INSTALL2ebcfd451122ed/ashr/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ashr/00new/ashr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘ashr’
finding HTML links ... done
ash html
ash_pois html
ashci html
ashr html
calc_logLR html
calc_loglik html
calc_mixmean html
calc_mixsd html
calc_null_loglik html
calc_null_vloglik html
calc_vlogLR html
calc_vloglik html
cdf.ash html
cdf_conv html
cdf_post html
comp_cdf html
comp_cdf_conv html
comp_cdf_conv.normalmix html
comp_cdf_conv.unimix html
comp_cdf_post html
comp_dens html
comp_dens_conv html
comp_dens_conv.normalmix html
comp_dens_conv.unimix html
comp_mean html
comp_mean.normalmix html
comp_mean.tnormalmix html
comp_mean2 html
comp_postmean html
comp_postmean2 html
comp_postprob html
comp_postsd html
comp_sd html
comp_sd.normalmix html
comp_sd.tnormalmix html
compute_lfsr html
cxxMixSquarem html
dens html
dens_conv html
dlogf html
estimate_mixprop html
gen_etruncFUN html
get_density html
get_lfdr html
get_post_sample html
igmix html
lik_binom html
lik_logF html
lik_normal html
lik_normalmix html
lik_pois html
lik_t html
log_comp_dens_conv html
log_comp_dens_conv.normalmix html
log_comp_dens_conv.unimix html
loglik_conv html
loglik_conv.default html
mixEM html
mixIP html
mixSQP html
mixVBEM html
mixcdf html
mixcdf.default html
mixmean2 html
mixprop html
my_e2truncbeta html
my_e2truncgamma html
my_e2truncnorm html
my_e2trunct html
my_etruncbeta html
my_etruncgamma html
my_etrunclogf html
my_etruncnorm html
my_etrunct html
my_vtruncnorm html
ncomp html
ncomp.default html
normalmix html
pcdf_post html
plogf html
plot.ash html
plot_diagnostic html
pm_on_zero html
post_sample html
post_sample.normalmix html
post_sample.unimix html
posterior_dist html
postmean html
postmean2 html
postsd html
print.ash html
prune html
qval.from.lfdr html
set_data html
summary.ash html
tnormalmix html
unimix html
vcdf_post html
w_mixEM html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ashr)