* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘aroma.cn’ ...
** this is package ‘aroma.cn’ version ‘1.7.1’
** package ‘aroma.cn’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘aroma.cn’
    finding HTML links ... done
    AbstractCurveNormalization              html  
    MultiSourceCopyNumberNormalization      html  
    Non-documented_objects                  html  
    PairedPscbsModel                        html  
    PrincipalCurveNormalization             html  
    TotalCnBinnedSmoothing                  html  
    TotalCnKernelSmoothing                  html  
    TotalCnSmoothing                        html  
    TumorBoostNormalization                 html  
    XYCurveNormalization                    html  
    aroma.cn-package                        html  
    callAllelicBalanceByBAFs.PairedPSCBS    html  
    callCopyNeutralRegions.PairedPSCBS      html  
    callPeaks.PeaksAndValleys               html  
    callXXorXY.numeric                      html  
    cnr                                     html  
    extractTupleOfDataFiles.MultiSourceCopyNumberNormalization
                                            html  
    findAtomicAberrations.CopyNumberRegions
                                            html  
    fitOne.MultiSourceCopyNumberNormalization
                                            html  
    getAllNames.MultiSourceCopyNumberNormalization
                                            html  
    getFitAromaUgpFile.MultiSourceCopyNumberNormalization
                                            html  
    getInputDataSets.MultiSourceCopyNumberNormalization
                                            html  
    getSmoothedDataSets.MultiSourceCopyNumberNormalization
                                            html  
    getSubsetToFit.MultiSourceCopyNumberNormalization
                                            html  
    normalizeBAFsByRegions.PairedPSCBS      html  
    normalizeMirroredBAFsByRegions.matrix   html  
    normalizePrincipalCurve.matrix          html  
    process.MultiSourceCopyNumberNormalization
                                            html  
    testAllelicBalanceByBAFs                html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (aroma.cn)