* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘apex’ ...
** this is package ‘apex’ version ‘1.0.7’
** package ‘apex’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘apex’
    finding HTML links ... done
    accessors                               html  
    add.gaps                                html  
    apex-package                            html  
    concatenate                             html  
    dist.multidna                           html  
    getTree                                 html  
    initialize-multidna-method              html  
    initialize-multiphyDat-method           html  
    multidna                                html  
    multidna2alignment                      html  
    multidna2genind                         html  
    multidna2multiphyDat                    html  
    multiphyDat                             html  
    plot-multidna-method                    html  
    readfiles                               html  
    rm.gaps                                 html  
    show-multidna-method                    html  
    show-multiphyDat-method                 html  
    subset.multidna                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (apex)