* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘apLCMS’ ...
** this is package ‘apLCMS’ version ‘6.8.3’
** package ‘apLCMS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPsCj7S/R.INSTALL14fd7557bf5fde/apLCMS/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c CalDen.cpp -o CalDen.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o apLCMS.so CalDen.o RcppExports.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPsCj7S/R.INSTALL14fd7557bf5fde/apLCMS/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPsCj7S/R.INSTALL14fd7557bf5fde/apLCMS/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPsCj7S/R.INSTALL14fd7557bf5fde/apLCMS/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-apLCMS/00new/apLCMS/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘apLCMS’
    finding HTML links ... done
    EIC.plot                                html  
    EIC.plot.learn                          html  
    adaptive.bin.2                          html  
    adaptive.bin                            html  
    adduct.table                            html  
    adjust.time                             html  
    apLCMS                                  html  
    cdf.to.ftr                              html  
    cont.index                              html  
    eic.disect                              html  
    eic.pred                                html  
    eic.qual                                html  
    feature.align                           html  
    features                                html  
    find.match                              html  
    find.tol                                html  
    find.tol.time                           html  
    find.turn.point                         html  
    interpol.area                           html  
    learn.cdf                               html  
    load.lcms                               html  
    make.known.table                        html  
    mass.match                              html  
    merge_seq_3                             html  
    metabolite.table                        html  
    peak.characterize                       html  
    plot_cdf_2d                             html  
    plot_txt_2d                             html  
    present.cdf.3d                          html  
    proc.cdf.2d                             html  
    proc.cdf                                html  
    proc.txt                                html  
    prof                                    html  
    prof.to.features                        html  
    recover.weaker                          html  
    rm.ridge                                html  
    semi.sup.2d                             html  
    semi.sup                                html  
    semi.sup.learn                          html  
    target.search                           html  
    two.step.hybrid.2d                      html  
    two.step.hybrid                         html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (apLCMS)