* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘apLCMS’ ... ** this is package ‘apLCMS’ version ‘6.8.3’ ** package ‘apLCMS’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPsCj7S/R.INSTALL14fd7557bf5fde/apLCMS/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CalDen.cpp -o CalDen.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o apLCMS.so CalDen.o RcppExports.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPsCj7S/R.INSTALL14fd7557bf5fde/apLCMS/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPsCj7S/R.INSTALL14fd7557bf5fde/apLCMS/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPsCj7S/R.INSTALL14fd7557bf5fde/apLCMS/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-apLCMS/00new/apLCMS/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘apLCMS’ finding HTML links ... done EIC.plot html EIC.plot.learn html adaptive.bin.2 html adaptive.bin html adduct.table html adjust.time html apLCMS html cdf.to.ftr html cont.index html eic.disect html eic.pred html eic.qual html feature.align html features html find.match html find.tol html find.tol.time html find.turn.point html interpol.area html learn.cdf html load.lcms html make.known.table html mass.match html merge_seq_3 html metabolite.table html peak.characterize html plot_cdf_2d html plot_txt_2d html present.cdf.3d html proc.cdf.2d html proc.cdf html proc.txt html prof html prof.to.features html recover.weaker html rm.ridge html semi.sup.2d html semi.sup html semi.sup.learn html target.search html two.step.hybrid.2d html two.step.hybrid html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (apLCMS)