* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘antedep’ ... ** this is package ‘antedep’ version ‘0.2.0’ ** package ‘antedep’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘antedep’ finding HTML links ... done Bell html Bz html as.ts.antedep_sim html bic_gau html bic_order_cat html bic_order_gau html bic_order_inad html bolus_inad html cattle_growth html ci_cat html ci_gau html ci_inad html cochlear_implant html coef.antedep html confint.antedep html deviance.antedep html dot-bell_mean_from_theta html dot-bell_theta_from_mean html dot-blend_cat_params_em html dot-build_gau_covariance html dot-cat_prob_to_theta html dot-cat_theta_to_prob html dot-ci_alpha_theta_louis_fe html dot-ci_wald_i_louis_fe html dot-compute_marginal_ci html dot-compute_transition_ci html dot-construct_gau_covariance html dot-count_cells_cat html dot-count_cells_table_cat html dot-count_params_cat html dot-count_params_gau html dot-count_params_homogeneity html dot-counts_to_probs_cat html dot-counts_to_transition_probs html dot-default_marginal_cat html dot-default_transition_cat html dot-em_e_step_gau html dot-em_m_step_gau html dot-expected_counts_to_cell_counts_cat_em html dot-extract_conditional_probs html dot-fit_cat_single_pop html dot-fit_cat_single_pop_marginalize html dot-fit_cat_stationary html dot-fit_cat_stationary_single html dot-fit_cat_timeinvariant html dot-fit_cat_timeinvariant_single html dot-fit_gau_em html dot-fit_inad_heterogeneous html dot-get_combinations_cat html dot-get_history html dot-group_means_gau html dot-history_to_index html dot-inad_build_transitions html dot-inad_conv_trunc html dot-inad_effective_innovation_mean html dot-inad_effective_innovation_param html dot-inad_make_thin_pmf html dot-inad_order2_dist html dot-inad_state_max html dot-inad_subject_ll_order0 html dot-inad_subject_ll_order1 html dot-inad_subject_ll_order2 html dot-initialize_gau_em html dot-initialize_gau_marginal html dot-innov_vec html dot-innovation_var_gau html dot-logL_from_counts_cat html dot-logL_gau_missing html dot-logL_inad_missing html dot-logL_subject_cat html dot-logL_subject_cat_marginalize_p1 html dot-logL_subject_cat_marginalize_p2 html dot-logL_subject_cat_observed html dot-log_sum_exp html dot-loglik_contribution html dot-logsumexp_cat html dot-louis_info_i_fe html dot-mle_mean_gau html dot-pack_cat_params html dot-partial_corr_gau html dot-partial_corr_matrix_gau html dot-poster_general html dot-prism_residuals html dot-psi_kenward html dot-rss_gau html dot-rss_two_sample_gau html dot-rss_vector_gau html dot-safe_log html dot-safeguard_update_cat_em html dot-simulate_subject_cat html dot-thin_vec html dot-uniform_cat_params html dot-unpack_alpha html dot-unpack_cat_params html dot-validate_blocks_cat html dot-validate_params_cat html dot-validate_y_cat html em_cat html em_gau html em_inad html fit_cat html fit_gau html fit_inad html fitted.gau_fit html labor_force_cat html logL_cat html logL_gau html logL_inad html logL_inad_i html logLik.antedep html nobs.antedep html partial_corr html plot.cat_fit html plot.gau_fit html plot.inad_fit html plot.partial_corr html plot_prism html plot_profile html print.cat_ci html print.cat_fit html print.cat_lrt html print.gau_bic_order html print.gau_ci html print.gau_contrast_test html print.gau_fit html print.gau_homogeneity_test html print.gau_mean_test html print.gau_order_test html print.homogeneity_tests_inad html print.inad_ci html print.inad_fit html print.test_homogeneity_inad html race_100km html run_homogeneity_tests_inad html run_order_tests_cat html run_stationarity_tests_cat html run_stationarity_tests_gau html run_stationarity_tests_inad html simulate_cat html simulate_gau html simulate_inad html summary.cat_ci html summary.cat_fit html summary.gau_ci html summary.gau_fit html summary.inad_ci html summary.inad_fit html summary.partial_corr html test_contrast_gau html test_homogeneity_cat html test_homogeneity_gau html test_homogeneity_inad html test_one_sample_gau html test_order_cat html test_order_gau html test_order_inad html test_stationarity_cat html test_stationarity_gau html test_stationarity_inad html test_timeinvariance_cat html test_two_sample_gau html vcov.gau_fit html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (antedep)