* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘analogue’ ...
** package ‘analogue’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/Rtmpur5XFk/R.INSTALL2b73cc796f9c54/analogue/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c distx.c -o distx.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c distxy.c -o distxy.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c wastats.c -o wastats.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o analogue.so distx.o distxy.o init.o wastats.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpur5XFk/R.INSTALL2b73cc796f9c54/analogue/src'
make[1]: Entering directory '/tmp/Rtmpur5XFk/R.INSTALL2b73cc796f9c54/analogue/src'
make[1]: Leaving directory '/tmp/Rtmpur5XFk/R.INSTALL2b73cc796f9c54/analogue/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-analogue/00new/analogue/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘analogue’
    finding HTML links ... done
    ImbrieKipp                              html  
    Pollen                                  html  
    RMSEP                                   html  
    Stratiplot                              html  
    abernethy                               html  
    analog                                  html  
    analogue-internal                       html  
    analogue-package                        html  
    bayesF                                  html  
    bootstrap                               html  
    bootstrap.wa                            html  
    bootstrapObject                         html  
    caterpillarPlot                         html  
    finding level-2 HTML links ... done

    chooseTaxa                              html  
    cma                                     html  
    compare                                 html  
    crossval                                html  
    densityplot.residLen                    html  
    deshrink                                html  
    dissimilarities                         html  
    distance                                html  
    evenlySampled                           html  
    fitted.logitreg                         html  
    fuse                                    html  
    getK                                    html  
    gradientDist                            html  
    hist.residLen                           html  
    histogram.residLen                      html  
    join                                    html  
    logitreg                                html  
    mat                                     html  
    mcarlo                                  html  
    minDC                                   html  
    n2                                      html  
    optima                                  html  
    panel.Loess                             html  
    panel.Stratiplot                        html  
    pcr                                     html  
    performance                             html  
    plot.dissimilarities                    html  
    plot.evenSample                         html  
    plot.logitreg                           html  
    plot.mat                                html  
    plot.mcarlo                             html  
    plot.minDC                              html  
    plot.prcurve                            html  
    plot.residLen                           html  
    plot.roc                                html  
    plot.sppResponse                        html  
    plot.wa                                 html  
    prcurve                                 html  
    predict.logitreg                        html  
    predict.mat                             html  
    predict.pcr                             html  
    predict.prcurve                         html  
    predict.wa                              html  
    rankDC                                  html  
    reconPlot                               html  
    residLen                                html  
    residuals.prcurve                       html  
    rlgh                                    html  
    roc                                     html  
    scores.prcurve                          html  
    screeplot                               html  
    smoothFuns                              html  
    splitSample                             html  
    sppResponse.prcurve                     html  
    stdError                                html  
    summary.analog                          html  
    summary.bootstrap.mat                   html  
    summary.cma                             html  
    summary.mat                             html  
    summary.predict.mat                     html  
    swapdiat                                html  
    swappH                                  html  
    timetrack                               html  
    tortula                                 html  
    tran                                    html  
    varExpl                                 html  
    wa                                      html  
    weightedCor                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (analogue)