* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘amap’ ...
** package ‘amap’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-13) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmptpTcQa/R.INSTALL1dd8fa725521e9/amap/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c acprob.cpp -o acprob.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c burt.c -o burt.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c diss.c -o diss.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distance.cpp -o distance.o
In file included from distance_T.h:385,
from distance.cpp:3:
distance_T.h.h: In instantiation of ‘static void* amap::distance_T<T>::thread_dist(void*) [with T = double]’:
distance_T.h.h:755:21: required from ‘static void amap::distance_T<T>::distance(double*, int*, int*, T*, int*, int*, int*, int*, int) [with T = double]’
distance.cpp:23:31: required from here
distance_T.h.h:840:30: warning: variable ‘ij’ set but not used [-Wunused-but-set-variable]
840 | int nbprocess,nr,nc,i,j,dc,ij;
| ^~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c hclust.cpp -o hclust.o
In file included from distance_T.h:385,
from hclust_T.h.h:6,
from hclust_T.h:45,
from hclust.cpp:49:
distance_T.h.h: In instantiation of ‘static void* amap::distance_T<T>::thread_dist(void*) [with T = double]’:
distance_T.h.h:755:21: required from ‘static void amap::distance_T<T>::distance(double*, int*, int*, T*, int*, int*, int*, int*, int) [with T = double]’
hclust_T.h.h:206:35: required from ‘void hclust_T::hclust(int*, double*, int, int, int*, int*, int*, int*, int*, int*, int*, double*, double*, T*, int*) [with T = double]’
hclust.cpp:79:31: required from here
distance_T.h.h:840:30: warning: variable ‘ij’ set but not used [-Wunused-but-set-variable]
840 | int nbprocess,nr,nc,i,j,dc,ij;
| ^~
distance_T.h.h: In instantiation of ‘static void* amap::distance_T<T>::thread_dist(void*) [with T = float]’:
distance_T.h.h:755:21: required from ‘static void amap::distance_T<T>::distance(double*, int*, int*, T*, int*, int*, int*, int*, int) [with T = float]’
hclust_T.h.h:50:34: required from ‘void hclust_T::hcluster(double*, int*, int*, int*, int*, int*, int*, int*, int*, double*, double*, int*, int*) [with T = float]’
hclust.cpp:115:30: required from here
distance_T.h.h:840:30: warning: variable ‘ij’ set but not used [-Wunused-but-set-variable]
hclust_T.h.h: In function ‘void hclust_T::hclust(int*, double*, int, int, int*, int*, int*, int*, int*, int*, int*, double*, double*, T*, int*) [with T = double]’:
hclust_T.h.h:126:14: warning: ‘jm’ may be used uninitialized [-Wmaybe-uninitialized]
126 | nn[i]=jm;
hclust_T.h.h:75:12: note: ‘jm’ was declared here
75 | int im,jm,jj,i,j,ncl,ind,i2,j2,k,ind1,ind2,ind3;
| ^~
distance_T.h.h:54:39: warning: ‘im’ may be used uninitialized [-Wmaybe-uninitialized]
54 | #define MAX( A , B ) ( ( A ) > ( B ) ? ( A ) : ( B ) )
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
hclust_T.h.h:161:12: note: in expansion of macro ‘MAX’
161 | j2=MAX (im,jm);
| ^~~
hclust_T.h.h:75:9: note: ‘im’ was declared here
75 | int im,jm,jj,i,j,ncl,ind,i2,j2,k,ind1,ind2,ind3;
| ^~
In function ‘void hclust_T::hclust(int*, double*, int, int, int*, int*, int*, int*, int*, int*, int*, double*, double*, T*, int*) [with T = float]’,
inlined from ‘void hclust_T::hcluster(double*, int*, int*, int*, int*, int*, int*, int*, int*, double*, double*, int*, int*) [with T = float]’ at hclust_T.h.h:62:24,
inlined from ‘void hcluster(double*, int*, int*, int*, int*, int*, int*, int*, int*, double*, double*, int*, int*, int*)’ at hclust.cpp:115:30:
hclust_T.h.h:126:14: warning: ‘jm’ may be used uninitialized [-Wmaybe-uninitialized]
126 | nn[i]=jm;
hclust_T.h.h: In function ‘void hcluster(double*, int*, int*, int*, int*, int*, int*, int*, int*, double*, double*, int*, int*, int*)’:
hclust_T.h.h:75:12: note: ‘jm’ was declared here
75 | int im,jm,jj,i,j,ncl,ind,i2,j2,k,ind1,ind2,ind3;
| ^~
In function ‘void hclust_T::hclust(int*, double*, int, int, int*, int*, int*, int*, int*, int*, int*, double*, double*, T*, int*) [with T = float]’,
inlined from ‘void hclust_T::hcluster(double*, int*, int*, int*, int*, int*, int*, int*, int*, double*, double*, int*, int*) [with T = float]’ at hclust_T.h.h:62:24,
inlined from ‘void hcluster(double*, int*, int*, int*, int*, int*, int*, int*, int*, double*, double*, int*, int*, int*)’ at hclust.cpp:115:30:
distance_T.h.h:54:39: warning: ‘im’ may be used uninitialized [-Wmaybe-uninitialized]
54 | #define MAX( A , B ) ( ( A ) > ( B ) ? ( A ) : ( B ) )
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
hclust_T.h.h:161:12: note: in expansion of macro ‘MAX’
161 | j2=MAX (im,jm);
| ^~~
hclust_T.h.h: In function ‘void hcluster(double*, int*, int*, int*, int*, int*, int*, int*, int*, double*, double*, int*, int*, int*)’:
hclust_T.h.h:75:9: note: ‘im’ was declared here
75 | int im,jm,jj,i,j,ncl,ind,i2,j2,k,ind1,ind2,ind3;
| ^~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmeans.cpp -o kmeans.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c matrice.cpp -o matrice.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c pop.f -o pop.o
pop.f:365:35:
365 | CDIF = ABS(COUTS(I2J2)) - ABS(COUTS(I1J1))
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
pop.f:367:39:
367 | CDIF = COUTS(I2J2) - COUTS(I1J1)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o amap.so acprob.o burt.o diss.o distance.o hclust.o init.o kmeans.o matrice.o pop.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmptpTcQa/R.INSTALL1dd8fa725521e9/amap/src'
make[1]: Entering directory '/tmp/RtmptpTcQa/R.INSTALL1dd8fa725521e9/amap/src'
make[1]: Leaving directory '/tmp/RtmptpTcQa/R.INSTALL1dd8fa725521e9/amap/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-amap/00new/amap/libs
** R
** data
** demo
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘amap’
finding HTML links ... done
Kmeans html
acp html
acpgen html
acprob html
afc html
burt html
diss html
dist html
hcluster html
lubisch html
plot.acp html
pop html
varrob html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (amap)