* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘aidR’ ...
** this is package ‘aidR’ version ‘0.2.4’
** package ‘aidR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘aidR’
    finding HTML links ... done
    aidR-package                            html  
    check_completeness                      html  
    check_completeness_range                html  
    check_insulin_totals                    html  
    clean                                   html  
    clean.carelink                          html  
    clean.dexcom_clarity                    html  
    clean.glooko                            html  
    clean.mylife                            html  
    clean.tandem_source                     html  
    clean.tidepool                          html  
    clean.yourloops                         html  
    dot-aggregate_per_day.aidR              html  
    dot-carelink_carb_variants.aidR         html  
    dot-check_completeness_id.aidR          html  
    dot-check_completeness_range_id.aidR    html  
    dot-check_if_missing_columns_with_data.aidR
                                            html  
    dot-check_insulin_total.aidR            html  
    dot-check_time_shift.aidR               html  
    dot-clean_carelink_CGM.aidR             html  
    dot-clean_carelink_SMBG.aidR            html  
    dot-clean_carelink_bolus.aidR           html  
    dot-clean_carelink_carbs.aidR           html  
    dot-clean_mylife_SMBG.aidR              html  
    dot-clean_mylife_bolus.aidR             html  
    dot-clean_mylife_carbs.aidR             html  
    dot-coerce_to.aidR                      html  
    dot-convert_BG_units_carelink.aidR      html  
    dot-convert_excel_datetime.aidR         html  
    dot-convert_excel_serial.aidR           html  
    dot-convert_timestamp_carelink.aidR     html  
    dot-create_link_id.aidR                 html  
    dot-daily_insulin_totals.aidR           html  
    dot-detect_csv_separator.aidR           html  
    dot-diax_device.aidR                    html  
    dot-diax_device_col.aidR                html  
    dot-diax_list.aidR                      html  
    dot-diax_metadata.aidR                  html  
    dot-diax_metadata_time.aidR             html  
    dot-diax_series.aidR                    html  
    dot-diax_series_map.aidR                html  
    dot-diax_value_col.aidR                 html  
    dot-draw_leader_lines.aidR              html  
    dot-extract_estimated_absorption_duration_tidepool.aidR
                                            html  
    dot-extract_net_carbs_tidepool.aidR     html  
    dot-filter_cgm.aidR                     html  
    dot-filter_near_duplicates.aidR         html  
    dot-filter_overwritten_carbs.aidR       html  
    dot-filter_relevant_files.aidR          html  
    dot-find_near_duplicates.aidR           html  
    dot-find_overwritten_carbs.aidR         html  
    dot-find_slow_carbs.aidR                html  
    dot-format_SMBG_glooko.aidR             html  
    dot-format_SMBG_tidepool.aidR           html  
    dot-format_basal_glooko.aidR            html  
    dot-format_basal_tandem_source.aidR     html  
    dot-format_basal_tidepool.aidR          html  
    dot-format_basal_yourloops.aidR         html  
    dot-format_bg_tandem_source.aidR        html  
    dot-format_bolus_calculator_tidepool.aidR
                                            html  
    dot-format_bolus_glooko.aidR            html  
    dot-format_bolus_tandem_source.aidR     html  
    dot-format_bolus_tidepool.aidR          html  
    dot-format_bolus_yourloops.aidR         html  
    dot-format_carbs_glooko.aidR            html  
    dot-format_carbs_tandem_source.aidR     html  
    dot-format_carbs_yourloops.aidR         html  
    dot-format_cgm_dexcom_clarity.aidR      html  
    dot-format_cgm_glooko.aidR              html  
    dot-format_cgm_tandem_source.aidR       html  
    dot-format_cgm_tidepool.aidR            html  
    dot-format_cgm_yourloops.aidR           html  
    dot-format_date_ranges.aidR             html  
    dot-format_diax_time.aidR               html  
    dot-format_food_tidepool.aidR           html  
    dot-format_glooko_file.aidR             html  
    dot-format_rescuecarbs_yourloops.aidR   html  
    dot-format_tandem_source_file.aidR      html  
    dot-format_timestamp_yourloops.aidR     html  
    dot-format_total_basal_glooko.aidR      html  
    dot-format_total_basal_tandem_source.aidR
                                            html  
    dot-format_total_bolus_glooko.aidR      html  
    dot-format_total_insulin_glooko.aidR    html  
    dot-format_units.aidR                   html  
    dot-get_all_files_in_path.aidR          html  
    dot-get_carelink_BWZ.aidR               html  
    dot-get_carelink_CGM.aidR               html  
    dot-get_carelink_SMBG.aidR              html  
    dot-get_carelink_aggr_auto_insulin.aidR
                                            html  
    dot-get_carelink_alerts.aidR            html  
    dot-get_carelink_bolus.aidR             html  
    dot-get_carelink_carb_variant.aidR      html  
    dot-get_carelink_correction_bolus_info.aidR
                                            html  
    dot-get_carelink_device_changes.aidR    html  
    dot-get_carelink_insulin_action_curve_over_time.aidR
                                            html  
    dot-get_carelink_prime.aidR             html  
    dot-get_carelink_scheduled_basal_rates.aidR
                                            html  
    dot-get_carelink_sensor_calibration.aidR
                                            html  
    dot-get_carelink_sensor_exceptions.aidR
                                            html  
    dot-get_carelink_temp_basal.aidR        html  
    dot-get_glooko_file_lookup.aidR         html  
    dot-get_sep_dexcom_clarity.aidR         html  
    dot-get_tandem_source_file_lookup.aidR
                                            html  
    dot-get_yourloops_file_lookup.aidR      html  
    dot-get_yourloops_file_type.aidR        html  
    dot-harmonise_column_types.aidR         html  
    dot-id_prefix.aidR                      html  
    dot-ids_in_data.aidR                    html  
    dot-is_carelink_format.aidR             html  
    dot-is_dexcom_clarity_format.aidR       html  
    dot-is_glooko_file_type.aidR            html  
    dot-is_glooko_format.aidR               html  
    dot-is_mylife_format.aidR               html  
    dot-is_numeric_col.aidR                 html  
    dot-is_tandem_source_file_type.aidR     html  
    dot-is_tandem_source_format.aidR        html  
    dot-is_tidepool_format.aidR             html  
    dot-is_yourloops_format.aidR            html  
    dot-link_bolus_carbs_glooko.aidR        html  
    dot-link_bolus_carbs_tandem_source.aidR
                                            html  
    dot-link_bolus_carbs_tidepool.aidR      html  
    dot-log_removed.aidR                    html  
    dot-match_types_before_merging.aidR     html  
    dot-merge_by_type.aidR                  html  
    dot-merge_per_id.aidR                   html  
    dot-merge_slow_carbs.aidR               html  
    dot-most_general_class.aidR             html  
    dot-open_carelink_file.aidR             html  
    dot-plot_single_day.aidR                html  
    dot-prep_plot_data.aidR                 html  
    dot-process_file.aidR                   html  
    dot-read_carelink_raw.aidR              html  
    dot-read_dexcom_clarity_files.aidR      html  
    dot-read_glooko_file.aidR               html  
    dot-read_tandem_source_file.aidR        html  
    dot-read_tidepool_sheet.aidR            html  
    dot-read_yourloops_files.aidR           html  
    dot-rename_bolus_tandem_source.aidR     html  
    dot-sort_by_time.aidR                   html  
    dot-spread_markers.aidR                 html  
    dot-subset_by_id.aidR                   html  
    dot-sum_or_na.aidR                      html  
    dot-total_basal_per_day.aidR            html  
    dot-total_bolus_per_day.aidR            html  
    filter_CGM                              html  
    filter_carbs                            html  
    get_cgmquantify_format                  html  
    get_iglu_format                         html  
    merge_all                               html  
    parse_data                              html  
    plot_day                                html  
    read_carelink                           html  
    read_dexcom_clarity                     html  
    read_glooko                             html  
    read_mylife                             html  
    read_tandem_source                      html  
    read_tidepool                           html  
    read_yourloops                          html  
    removed_entries                         html  
    write_DIAX_format                       html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (aidR)