* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘adespatial’ ... ** package ‘adespatial’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpdjq7mU/R.INSTALL1d0b7a286a0767/adespatial/src' gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c WRperiodogram.c -o WRperiodogram.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c adesub.c -o adesub.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c betadiv.c -o betadiv.o betadiv.c: In function ‘euclidean’: betadiv.c:36:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 36 | for (i = 0; i < I; i++) | ^~~ In file included from betadiv.c:7: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 372 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:42:9: note: in expansion of macro ‘UNPROTECT’ 42 | UNPROTECT(3); | ^~~~~~~~~ betadiv.c: In function ‘manhattan’: betadiv.c:476:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 476 | for (i=0; i<I; i++) | ^~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 372 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:483:9: note: in expansion of macro ‘UNPROTECT’ 483 | UNPROTECT(3); | ^~~~~~~~~ betadiv.c: In function ‘canberra’: betadiv.c:506:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 506 | for (i=0; i<I; i++) | ^~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 372 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:530:9: note: in expansion of macro ‘UNPROTECT’ 530 | UNPROTECT(4); | ^~~~~~~~~ betadiv.c: In function ‘kulczynski’: betadiv.c:549:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 549 | for (i=0; i<I; i++) | ^~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 372 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:563:9: note: in expansion of macro ‘UNPROTECT’ 563 | UNPROTECT(3); | ^~~~~~~~~ betadiv.c: In function ‘divergence’: betadiv.c:586:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 586 | for (i=0; i<I; i++) | ^~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 372 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:608:9: note: in expansion of macro ‘UNPROTECT’ 608 | UNPROTECT(4); | ^~~~~~~~~ betadiv.c: In function ‘modmean’: betadiv.c:630:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 630 | for (i=0; i<I; i++) | ^~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 372 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:646:9: note: in expansion of macro ‘UNPROTECT’ 646 | UNPROTECT(4); | ^~~~~~~~~ betadiv.c: In function ‘whittaker’: betadiv.c:701:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 701 | for (i=0; i<I; i++) | ^~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 372 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:718:9: note: in expansion of macro ‘UNPROTECT’ 718 | UNPROTECT(3); | ^~~~~~~~~ betadiv.c: In function ‘wishart’: betadiv.c:737:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 737 | for (i=0; i<I; i++) | ^~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 372 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:752:9: note: in expansion of macro ‘UNPROTECT’ 752 | UNPROTECT(3); | ^~~~~~~~~ betadiv.c: In function ‘percentdiff’: betadiv.c:982:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 982 | for (i = 0; i < I; i++) | ^~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 372 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:1000:9: note: in expansion of macro ‘UNPROTECT’ 1000 | UNPROTECT(6); | ^~~~~~~~~ betadiv.c: In function ‘binary_D’: betadiv.c:1020:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1020 | for (i=0; i<I; i++) | ^~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 372 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:1035:9: note: in expansion of macro ‘UNPROTECT’ 1035 | UNPROTECT(4); | ^~~~~~~~~ gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c buildbinary.c -o buildbinary.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c constr.hclust.c -o constr.hclust.o constr.hclust.c: In function ‘initNNlist’: constr.hclust.c:109:15: warning: ‘nn’ may be used uninitialized [-Wmaybe-uninitialized] 109 | nn_idx[i] = nn; | ~~~~~~~~~~^~~~ constr.hclust.c:99:25: note: ‘nn’ was declared here 99 | unsigned int i, j, k, nn; | ^~ constr.hclust.c: In function ‘updateNNlist’: constr.hclust.c:130:13: warning: ‘nn’ may be used uninitialized [-Wmaybe-uninitialized] 130 | nn_idx[i] = nn; | ~~~~~~~~~~^~~~ constr.hclust.c:121:22: note: ‘nn’ was declared here 121 | unsigned int j, k, nn; | ^~ gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c forward.c -o forward.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stipermute.c -o stipermute.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c testsmoran.c -o testsmoran.o gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o adespatial.so WRperiodogram.o adesub.o betadiv.o buildbinary.o constr.hclust.o forward.o init.o stipermute.o testsmoran.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpdjq7mU/R.INSTALL1d0b7a286a0767/adespatial/src' make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpdjq7mU/R.INSTALL1d0b7a286a0767/adespatial/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpdjq7mU/R.INSTALL1d0b7a286a0767/adespatial/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-adespatial/00new/adespatial/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘adespatial’ finding HTML links ... done Cperiodogram html LCBD.comp html ScotchWhiskey html TBI html Tiahura html WRperiodogram html aem html aem.build.binary html aem.time html aem.weight.edges html bacProdxy html beta.div html beta.div.comp html chooseCN html constr.hclust-class html constr.hclust html create.dbMEM.model html dbmem html directional.response html dist.ldc html envspace.test html forward.sel html forward.sel.par html give.thresh html global.rtest html listw.candidates html listw.explore html listw.select html mastigouche html mem html mem.select html mfpa html moran.bounds html moran.randtest html moranNP.randtest html mspa html msr.4thcorner html msr html msr.mantelrtest html msr.varipart html mst.nb html multispati html ortho.AIC html orthobasis.poly html plot.TBI html plot.constr.hclust html plot.orthobasisSp html rotation html scalogram html stimodels html test.W html tpaired.krandtest html tpaired.randtest html trichoptera html variogmultiv html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adespatial)