* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘adespatial’ ...
** package ‘adespatial’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/Rtmpz28UPn/R.INSTALL190d873f362c3e/adespatial/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c WRperiodogram.c -o WRperiodogram.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c adesub.c -o adesub.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c betadiv.c -o betadiv.o
betadiv.c: In function ‘euclidean’:
betadiv.c:36:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
36 | for (i = 0; i < I; i++)
| ^~~
In file included from betadiv.c:7:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
372 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:42:9: note: in expansion of macro ‘UNPROTECT’
42 | UNPROTECT(3);
| ^~~~~~~~~
betadiv.c: In function ‘manhattan’:
betadiv.c:476:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
476 | for (i=0; i<I; i++)
| ^~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
372 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:483:9: note: in expansion of macro ‘UNPROTECT’
483 | UNPROTECT(3);
| ^~~~~~~~~
betadiv.c: In function ‘canberra’:
betadiv.c:506:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
506 | for (i=0; i<I; i++)
| ^~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
372 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:530:9: note: in expansion of macro ‘UNPROTECT’
530 | UNPROTECT(4);
| ^~~~~~~~~
betadiv.c: In function ‘kulczynski’:
betadiv.c:549:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
549 | for (i=0; i<I; i++)
| ^~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
372 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:563:9: note: in expansion of macro ‘UNPROTECT’
563 | UNPROTECT(3);
| ^~~~~~~~~
betadiv.c: In function ‘divergence’:
betadiv.c:586:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
586 | for (i=0; i<I; i++)
| ^~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
372 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:608:9: note: in expansion of macro ‘UNPROTECT’
608 | UNPROTECT(4);
| ^~~~~~~~~
betadiv.c: In function ‘modmean’:
betadiv.c:630:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
630 | for (i=0; i<I; i++)
| ^~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
372 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:646:9: note: in expansion of macro ‘UNPROTECT’
646 | UNPROTECT(4);
| ^~~~~~~~~
betadiv.c: In function ‘whittaker’:
betadiv.c:701:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
701 | for (i=0; i<I; i++)
| ^~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
372 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:718:9: note: in expansion of macro ‘UNPROTECT’
718 | UNPROTECT(3);
| ^~~~~~~~~
betadiv.c: In function ‘wishart’:
betadiv.c:737:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
737 | for (i=0; i<I; i++)
| ^~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
372 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:752:9: note: in expansion of macro ‘UNPROTECT’
752 | UNPROTECT(3);
| ^~~~~~~~~
betadiv.c: In function ‘percentdiff’:
betadiv.c:982:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
982 | for (i = 0; i < I; i++)
| ^~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
372 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:1000:9: note: in expansion of macro ‘UNPROTECT’
1000 | UNPROTECT(6);
| ^~~~~~~~~
betadiv.c: In function ‘binary_D’:
betadiv.c:1020:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
1020 | for (i=0; i<I; i++)
| ^~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
372 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:1035:9: note: in expansion of macro ‘UNPROTECT’
1035 | UNPROTECT(4);
| ^~~~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c buildbinary.c -o buildbinary.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c constr.hclust.c -o constr.hclust.o
constr.hclust.c: In function ‘initNNlist’:
constr.hclust.c:109:15: warning: ‘nn’ may be used uninitialized [-Wmaybe-uninitialized]
109 | nn_idx[i] = nn;
| ~~~~~~~~~~^~~~
constr.hclust.c:99:25: note: ‘nn’ was declared here
99 | unsigned int i, j, k, nn;
| ^~
constr.hclust.c: In function ‘updateNNlist’:
constr.hclust.c:130:13: warning: ‘nn’ may be used uninitialized [-Wmaybe-uninitialized]
130 | nn_idx[i] = nn;
| ~~~~~~~~~~^~~~
constr.hclust.c:121:22: note: ‘nn’ was declared here
121 | unsigned int j, k, nn;
| ^~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c forward.c -o forward.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stipermute.c -o stipermute.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c testsmoran.c -o testsmoran.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o adespatial.so WRperiodogram.o adesub.o betadiv.o buildbinary.o constr.hclust.o forward.o init.o stipermute.o testsmoran.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpz28UPn/R.INSTALL190d873f362c3e/adespatial/src'
make[1]: Entering directory '/tmp/Rtmpz28UPn/R.INSTALL190d873f362c3e/adespatial/src'
make[1]: Leaving directory '/tmp/Rtmpz28UPn/R.INSTALL190d873f362c3e/adespatial/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-adespatial/00new/adespatial/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘adespatial’
finding HTML links ... done
Cperiodogram html
LCBD.comp html
ScotchWhiskey html
finding level-2 HTML links ... done
TBI html
Tiahura html
WRperiodogram html
aem html
aem.build.binary html
aem.time html
aem.weight.edges html
bacProdxy html
beta.div html
beta.div.comp html
chooseCN html
constr.hclust-class html
constr.hclust html
create.dbMEM.model html
dbmem html
directional.response html
dist.ldc html
envspace.test html
forward.sel html
forward.sel.par html
give.thresh html
global.rtest html
listw.candidates html
listw.explore html
listw.select html
mastigouche html
mem html
mem.select html
mfpa html
moran.bounds html
moran.randtest html
moranNP.randtest html
mspa html
msr.4thcorner html
msr html
msr.mantelrtest html
msr.varipart html
mst.nb html
multispati html
ortho.AIC html
orthobasis.poly html
plot.TBI html
plot.constr.hclust html
plot.orthobasisSp html
rotation html
scalogram html
stimodels html
test.W html
tpaired.krandtest html
tpaired.randtest html
trichoptera html
variogmultiv html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (adespatial)