* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘actiRhythm’ ... ** this is package ‘actiRhythm’ version ‘0.1.0’ ** package ‘actiRhythm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C++ compiler: ‘g++-16 (Debian 16.2.0-1) 16.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsV1ElG/R.INSTALL37999866093d2f/actiRhythm/src' g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sliding_window_cpp.cpp -o sliding_window_cpp.o sliding_window_cpp.cpp: In function ‘Rcpp::List calculate_all_circadian_cpp(Rcpp::NumericVector, int, int)’: sliding_window_cpp.cpp:522:9: warning: unused variable ‘minutes_per_day’ [-Wunused-variable] 522 | int minutes_per_day = hours_per_day * 60; | ^~~~~~~~~~~~~~~ g++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o actiRhythm.so RcppExports.o sliding_window_cpp.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsV1ElG/R.INSTALL37999866093d2f/actiRhythm/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsV1ElG/R.INSTALL37999866093d2f/actiRhythm/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsV1ElG/R.INSTALL37999866093d2f/actiRhythm/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-actiRhythm/00new/actiRhythm/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘actiRhythm’ finding HTML links ... done IS_cpp html IV_cpp html L5M10_cpp html actiRhythm-package html actiRhythm_colors html activity.balance.index html activity.extrema html activity.onset.offset html agd.counts html auto.calibrate html axivity.counts html backend_info html chi.sq.periodogram html circadian-analysis html circadian-fractal html circadian-period html circadian-plots html circadian.batch html circadian.daily html circadian.emd html circadian.flm html circadian.is.multiscale html circadian.onset.ci html circadian.period html circadian.quotient html circadian.raw html circadian.rhythm html circadian.spectrogram html circadian.ssa html circadian.wavelet html circadian.workbook html circadian_cpp html composite.phase.deviation html consensus.rhythmicity html cosinor.analysis html cosinor.antilogistic html cosinor.compare html cosinor.confidence.ellipse html cosinor.extended html cosinor.multicomponent html counts.from.data.frame html cpp-interface html cpp_available html curve.registration html detect.nonwear.choi html detect.nonwear.raw html detect.nonwear.troiano html dichotomy.index html dot-calculate.IS.IV html dot-calculate.LX.sliding html dot-calculate.RA html dot-calculate.daily.circadian html dot-calculate.hourly.profile html dot-calculate.phi html dot-calculate.sri.fast html dot-classify.rhythm.pattern html dot-empty.extended.cosinor.result html dot-onset.timing.variability html dot-sri.to.binary html example_agd html example_raw html fractal.dfa html geneactiv.counts html gt3x.counts html gt3x.to.agd html has.inclinometer html hilbert.huang html intradaily.variability.multiscale html lids html mfdfa html multiscale.entropy html period.ci html phase.concentration html plot.actiRhythm_circadian html plot_actogram html plot_changepoints html plot_chisq html plot_cosinor_ellipse html plot_cosinor_schematic html plot_dfa html plot_dichotomy html plot_emd html plot_extended_cosinor html plot_lids html plot_mfdfa html plot_mse html plot_multicomponent html plot_multiscale html plot_period_ci html plot_periodogram html plot_phase_rose html plot_profile html plot_raw_metrics html plot_rest_comparison html plot_spt html plot_ssa_wcor html plot_transitions html plot_wavelet html population.cosinor html print.actiRhythm_circadian html print.actiRhythm_cosinor html print.actiRhythm_cosinor_extended html print.actiRhythm_dfa html print.actiRhythm_mse html raw.metrics html read.actigraph.csv html read.agd html read.raw html residual.spectrum html rest.activity.fragmentation html rest.crespo html rest.hmm html rest.periods html rest.spt html rhythmicity.test html rolling_mean html rolling_sd html rolling_sum html save.circadian.plot html scale_color_actiRhythm html scale_fill_actiRhythm html set_actiRhythm_theme html sib.vanhees html sleep.changepoints html sleep.cole.kripke html sleep.from.spt html sleep.regularity.index html sleep.sadeh html social.jet.lag html sri.matrix html state.transitions html theme_actiRhythm html transition.probability html ultradian.bandpower html wavelet.coi html write.agd html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (actiRhythm)