* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘actiRhythm’ ...
** this is package ‘actiRhythm’ version ‘0.1.0’
** package ‘actiRhythm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++-15 (Debian 15.3.0-2) 15.3.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBpLInq/R.INSTALL2b3ed5914aae5/actiRhythm/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sliding_window_cpp.cpp -o sliding_window_cpp.o
sliding_window_cpp.cpp: In function ‘Rcpp::List calculate_all_circadian_cpp(Rcpp::NumericVector, int, int)’:
sliding_window_cpp.cpp:522:9: warning: unused variable ‘minutes_per_day’ [-Wunused-variable]
522 | int minutes_per_day = hours_per_day * 60;
| ^~~~~~~~~~~~~~~
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o actiRhythm.so RcppExports.o sliding_window_cpp.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBpLInq/R.INSTALL2b3ed5914aae5/actiRhythm/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBpLInq/R.INSTALL2b3ed5914aae5/actiRhythm/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBpLInq/R.INSTALL2b3ed5914aae5/actiRhythm/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-actiRhythm/00new/actiRhythm/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘actiRhythm’
finding HTML links ... done
IS_cpp html
IV_cpp html
L5M10_cpp html
actiRhythm-package html
actiRhythm_colors html
activity.balance.index html
activity.extrema html
activity.onset.offset html
agd.counts html
auto.calibrate html
axivity.counts html
backend_info html
chi.sq.periodogram html
circadian-analysis html
circadian-fractal html
circadian-period html
circadian-plots html
circadian.batch html
circadian.daily html
circadian.emd html
circadian.flm html
circadian.is.multiscale html
circadian.onset.ci html
circadian.period html
circadian.quotient html
circadian.raw html
circadian.rhythm html
circadian.spectrogram html
circadian.ssa html
circadian.wavelet html
circadian.workbook html
circadian_cpp html
composite.phase.deviation html
consensus.rhythmicity html
cosinor.analysis html
cosinor.antilogistic html
cosinor.compare html
cosinor.confidence.ellipse html
cosinor.extended html
cosinor.multicomponent html
counts.from.data.frame html
cpp-interface html
cpp_available html
curve.registration html
detect.nonwear.choi html
detect.nonwear.raw html
detect.nonwear.troiano html
dichotomy.index html
dot-calculate.IS.IV html
dot-calculate.LX.sliding html
dot-calculate.RA html
dot-calculate.daily.circadian html
dot-calculate.hourly.profile html
dot-calculate.phi html
dot-calculate.sri.fast html
dot-classify.rhythm.pattern html
dot-empty.extended.cosinor.result html
dot-onset.timing.variability html
dot-sri.to.binary html
example_agd html
example_raw html
fractal.dfa html
geneactiv.counts html
gt3x.counts html
gt3x.to.agd html
has.inclinometer html
hilbert.huang html
intradaily.variability.multiscale html
lids html
mfdfa html
multiscale.entropy html
period.ci html
phase.concentration html
plot.actiRhythm_circadian html
plot_actogram html
plot_changepoints html
plot_chisq html
plot_cosinor_ellipse html
plot_cosinor_schematic html
plot_dfa html
plot_dichotomy html
plot_emd html
plot_extended_cosinor html
plot_lids html
plot_mfdfa html
plot_mse html
plot_multicomponent html
plot_multiscale html
plot_period_ci html
plot_periodogram html
plot_phase_rose html
plot_profile html
plot_raw_metrics html
plot_rest_comparison html
plot_spt html
plot_ssa_wcor html
plot_transitions html
plot_wavelet html
population.cosinor html
print.actiRhythm_circadian html
print.actiRhythm_cosinor html
print.actiRhythm_cosinor_extended html
print.actiRhythm_dfa html
print.actiRhythm_mse html
raw.metrics html
read.actigraph.csv html
read.agd html
read.raw html
residual.spectrum html
rest.activity.fragmentation html
rest.crespo html
rest.hmm html
rest.periods html
rest.spt html
rhythmicity.test html
rolling_mean html
rolling_sd html
rolling_sum html
save.circadian.plot html
scale_color_actiRhythm html
scale_fill_actiRhythm html
set_actiRhythm_theme html
sib.vanhees html
sleep.changepoints html
sleep.cole.kripke html
sleep.from.spt html
sleep.regularity.index html
sleep.sadeh html
social.jet.lag html
sri.matrix html
state.transitions html
theme_actiRhythm html
transition.probability html
ultradian.bandpower html
wavelet.coi html
write.agd html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (actiRhythm)