* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘XYomics’ ...
** this is package ‘XYomics’ version ‘0.1.1’
** package ‘XYomics’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcSdRR9/R.INSTALLdb65058644e84/XYomics/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PCSF.cpp -o PCSF.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o XYomics.so PCSF.o RcppExports.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcSdRR9/R.INSTALLdb65058644e84/XYomics/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcSdRR9/R.INSTALLdb65058644e84/XYomics/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcSdRR9/R.INSTALLdb65058644e84/XYomics/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-XYomics/00new/XYomics/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘XYomics’
    finding HTML links ... done
    PCSF                                    html  
    XYomics-package                         html  
    call_sr                                 html  
    categorize_sex_sc                       html  
    categorized_enrich_sc                   html  
    construct_ppi_pcsf                      html  
    convertdf2enr                           html  
    generate_boxplot                        html  
    generate_cat_report                     html  
    generate_report                         html  
    get_string_network                      html  
    identify_sex_specific_genes             html  
    improved_pathway_enrichment             html  
    plot_network                            html  
    sex_interaction_analysis_bulk           html  
    sex_interaction_analysis_sc             html  
    sex_stratified_analysis_bulk            html  
    sex_stratified_analysis_sc              html  
    visualize_network                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (XYomics)