* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘XYomics’ ...
** this is package ‘XYomics’ version ‘0.1.4’
** package ‘XYomics’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-17) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpdqoq1c/R.INSTALL684f15f901e4f/XYomics/src'
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PCSF.cpp -o PCSF.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o XYomics.so PCSF.o RcppExports.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpdqoq1c/R.INSTALL684f15f901e4f/XYomics/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpdqoq1c/R.INSTALL684f15f901e4f/XYomics/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpdqoq1c/R.INSTALL684f15f901e4f/XYomics/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-XYomics/00new/XYomics/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘XYomics’
    finding HTML links ... done
    PCSF                                    html  
    XYomics-package                         html  
    call_sr                                 html  
    categorize_sex                          html  
    categorized_enrich                      html  
    construct_ppi_pcsf                      html  
    convert_gene_ids                        html  
    generate_cat_report                     html  
    generate_dotplot_sc                     html  
    generate_violinplot_bulk                html  
    get_string_network                      html  
    get_top_hubs                            html  
    plot_enrichment_dotplots                html  
    plot_network                            html  
    plot_network_pipeline                   html  
    plot_volcano_deg                        html  
    ppi_pipeline                            html  
    sex_interaction_analysis_bulk           html  
    sex_interaction_analysis_sc             html  
    sex_interaction_pipeline_sc             html  
    sex_stratified_analysis_bulk            html  
    sex_stratified_analysis_sc              html  
    sex_stratified_pipeline_sc              html  
    validate_input_bulk                     html  
    validate_input_sc                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (XYomics)