* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘WSGeometry’ ...
** package ‘WSGeometry’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
using C++11
make[1]: Entering directory '/tmp/RtmpF2TaQy/R.INSTALLdca24627b024a/WSGeometry/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD -fpic -g -O2 -Wall -pedantic -mtune=native -c bary_sinkhorn_armadillo.cpp -o bary_sinkhorn_armadillo.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD -fpic -g -O2 -Wall -pedantic -mtune=native -c iterative_bary.cpp -o iterative_bary.o
iterative_bary.cpp: In function ‘Rcpp::List wsbary_cxx_armaP(Rcpp::List, arma::mat, Rcpp::List, arma::mat, bool, int, int, int, double, double, bool, int, int)’:
iterative_bary.cpp:61:10: warning: unused variable ‘n’ [-Wunused-variable]
61 | double n=weightsR.size();
| ^
iterative_bary.cpp:98:7: warning: unused variable ‘L’ [-Wunused-variable]
98 | int L;
| ^
iterative_bary.cpp:99:7: warning: unused variable ‘dataCount’ [-Wunused-variable]
99 | int dataCount=0;
| ^~~~~~~~~
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD -fpic -g -O2 -Wall -pedantic -mtune=native -c maaipm.cpp -o maaipm.o
maaipm.cpp: In function ‘Rcpp::List maaipm_fixed_cpp(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::sp_mat, int, int, int, arma::vec, arma::vec, int, int, arma::sp_mat, int, double, int)’:
maaipm.cpp:182:10: warning: variable ‘relResidual_old_old’ set but not used [-Wunused-but-set-variable]
182 | double relResidual_old_old = relResidual_old;
| ^~~~~~~~~~~~~~~~~~~
maaipm.cpp:185:10: warning: variable ‘rel_gap_old_old’ set but not used [-Wunused-but-set-variable]
185 | double rel_gap_old_old = rel_gap_old;
| ^~~~~~~~~~~~~~~
maaipm.cpp:186:10: warning: variable ‘optval’ set but not used [-Wunused-but-set-variable]
186 | double optval=0;
| ^~~~~~
maaipm.cpp:207:7: warning: unused variable ‘L’ [-Wunused-variable]
207 | int L=x.n_elem;
| ^
maaipm.cpp: In function ‘Rcpp::List maaipm_free_cpp(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::mat, arma::mat, arma::sp_mat, int, int, int, arma::vec, arma::vec, int, int, arma::sp_mat, int, int, double, int)’:
maaipm.cpp:415:10: warning: variable ‘relResidual_old_old’ set but not used [-Wunused-but-set-variable]
415 | double relResidual_old_old = relResidual_old;
| ^~~~~~~~~~~~~~~~~~~
maaipm.cpp:418:10: warning: variable ‘rel_gap_old_old’ set but not used [-Wunused-but-set-variable]
418 | double rel_gap_old_old = rel_gap_old;
| ^~~~~~~~~~~~~~~
maaipm.cpp:419:10: warning: variable ‘optval’ set but not used [-Wunused-but-set-variable]
419 | double optval=0;
| ^~~~~~
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD -fpic -g -O2 -Wall -pedantic -mtune=native -c umaaipm.cpp -o umaaipm.o
umaaipm.cpp: In function ‘Rcpp::List umaaipm_free_cpp(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::mat, arma::mat, arma::sp_mat, int, int, int, arma::vec, arma::vec, int, int, arma::sp_mat, double, int, int, double, int)’:
umaaipm.cpp:116:10: warning: variable ‘relResidual_old_old’ set but not used [-Wunused-but-set-variable]
116 | double relResidual_old_old = relResidual_old;
| ^~~~~~~~~~~~~~~~~~~
umaaipm.cpp:119:10: warning: variable ‘rel_gap_old_old’ set but not used [-Wunused-but-set-variable]
119 | double rel_gap_old_old = rel_gap_old;
| ^~~~~~~~~~~~~~~
umaaipm.cpp:120:10: warning: variable ‘optval’ set but not used [-Wunused-but-set-variable]
120 | double optval=0;
| ^~~~~~
umaaipm.cpp: In function ‘Rcpp::List umaaipm_fixed_cpp(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::mat, arma::mat, arma::sp_mat, int, int, int, arma::vec, arma::vec, int, int, arma::sp_mat, double, int, double, int)’:
umaaipm.cpp:361:10: warning: variable ‘relResidual_old_old’ set but not used [-Wunused-but-set-variable]
361 | double relResidual_old_old = relResidual_old;
| ^~~~~~~~~~~~~~~~~~~
umaaipm.cpp:364:10: warning: variable ‘rel_gap_old_old’ set but not used [-Wunused-but-set-variable]
364 | double rel_gap_old_old = rel_gap_old;
| ^~~~~~~~~~~~~~~
umaaipm.cpp:365:10: warning: variable ‘optval’ set but not used [-Wunused-but-set-variable]
365 | double optval=0;
| ^~~~~~
umaaipm.cpp:387:7: warning: unused variable ‘L’ [-Wunused-variable]
387 | int L=x.n_elem;
| ^
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o WSGeometry.so RcppExports.o bary_sinkhorn_armadillo.o iterative_bary.o maaipm.o umaaipm.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpF2TaQy/R.INSTALLdca24627b024a/WSGeometry/src'
make[1]: Entering directory '/tmp/RtmpF2TaQy/R.INSTALLdca24627b024a/WSGeometry/src'
make[1]: Leaving directory '/tmp/RtmpF2TaQy/R.INSTALLdca24627b024a/WSGeometry/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-WSGeometry/00new/WSGeometry/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘WSGeometry’
finding HTML links ... done
barycenter_lp html
bin2d html
frechet_func html
geodesic_pos html
grid_positions html
kr_bary html
kr_dist html
location_scatter_bary html
multi_marginal html
plotGeodesic html
smear html
wasserstein_bary html
ws_bary_maaipm html
ws_dist html
ws_logpca html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (WSGeometry)