* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘WMFM’ ... ** this is package ‘WMFM’ version ‘1.1.4’ ** package ‘WMFM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘WMFM’ finding HTML links ... done addDerivedVariableToData html addFactorByFactorDifferenceOfDifferencesRow html addFactorByFactorSimpleDifferenceRows html addFittedQuantityRows html addLinearFactorDifferenceRow html addLinearTwoLevelFactorComparisonRow html addLogisticFactorByFactorConditionalOddsRatioRows html addLogisticFactorByFactorRatioOfOddsRatiosRow html addLogisticTwoLevelFactorComparisonRow html addNumericEffectRow html analysisRecipeDownloadExtension html appServer html appUI html applyWmfmLlmScoresToRecord html arithmeticTransformationInfo html as.data.frame.wmfmScores html attachResponseTransformationModeToModel html attachVariableTransformationsToModel html auditBadExplanationGrading html backTransformResponseDifferenceRow html backTransformResponseDifferenceValues html backTransformResponseRow html backTransformResponseValues html backtickNames html buildAddDerivedVariableConfirmLabel html buildAddDerivedVariableHelpText html buildAddDerivedVariablePlaceholder html buildAddDerivedVariableTitle html buildAdjustmentExplanationScaffold html buildAdjustmentMetadata html buildAdjustmentScoringContextBlock html buildAdjustmentScoringPolicy html buildAdjustmentScoringRubricGuidance html buildAdjustmentVariablePromptBlock html buildAnalysisRecipeFromFit html buildAnchorAuditEntry html buildAnchoredBaselinePromptBlock html buildAppExplanation html buildAppExplanationAudit html buildAppModelOutputs html buildAppOutputMessages html buildAppTeachingTutorExplanation html buildAverageContrastEmptyGroupMessage html buildAverageContrastInvalidLevelMessage html buildAverageContrastOverlappingLevelMessage html buildBadExplanationInstructionBlock html buildBadExplanationModelContext html buildBadExplanationPlan html buildBadExplanationPrompt html buildBadExplanationReferenceLevels html buildBadExplanationTypeGuide html buildChatProviderConnectionFailedMessage html buildChatProviderSetMessage html buildChatProviderStatus html buildChooseExampleFirstMessage html buildCoefficientOnlyConfidenceIntervalData html buildComparisonControlFactorSummary html buildComparisonControlPromptBlock html buildConfidenceIntervalBaseInfo html buildConfidenceIntervalNotation html buildConfidenceIntervalPrediction html buildConfidenceIntervalSortKey html buildContrastNewData html buildCustomContrastTooFewWeightsMessage html buildCustomContrastWeightsMustSumToZeroMessage html buildDataContextClearedMessage html buildDataContextSavedMessage html buildDataDescriptionTitle html buildDelimitedFileReadFailedMessage html buildDerivedConfidenceIntervalData html buildDerivedModeNote html buildDeterministicEquationTable html buildDeveloperModeIncorrectPasswordMessage html buildDeveloperModeLockedMessage html buildDeveloperModeStatus html buildDeveloperModeUnlockErrorStatus html buildDeveloperModeUnlockedMessage html buildDeveloperRepeatedScoringExport html buildDeveloperRepeatedScoringRunTable html buildDeveloperRepeatedScoringSummaryTable html buildDeveloperScoringGradeExport html buildDeveloperScoringJsonPayload html buildDeveloperScoringJsonText html buildDeveloperScoringLossTable html buildDeveloperScoringMetricTable html buildDeveloperScoringObjectText html buildDeveloperScoringProgressText html buildDeveloperScoringSemanticEvidenceTable html buildDeveloperScoringSummaryTable html buildDeveloperScoringWmfmModel html buildDuplicateContrastPairMessage html buildEligibleAdjustmentVariables html buildEquationCases html buildEquationComponentText html buildEquationDisplayRoleMetadata html buildEquationDisplayRoleSummary html buildEquationSpec html buildExampleReadyStatus html buildExplanationClaimEvidenceMap html buildExplanationClaimSupportNote html buildExplanationClaimSupportNotes html buildExplanationDeterministicQualityFlags html buildExplanationEvidenceInventory html buildExplanationMapQualityFlags html buildExplanationModelProfile html buildExplanationProvenanceText html buildExplanationRuleProfile html buildExplanationSkeletonPromptBlock html buildExplanationTeachingBaselineChoice html buildExplanationTeachingDataDescription html buildExplanationTeachingEvidenceTable html buildExplanationTeachingInterpretationScale html buildExplanationTeachingMainEffectDescription html buildExplanationTeachingNumber html buildExplanationTeachingOutcomeLabel html buildExplanationTeachingResearchQuestionLink html buildExplanationTeachingSummary html buildExplanationTeachingUncertaintySummary html buildExplanationTeachingVariableTransformationSummary html buildExplanationTeachingXChangeDescription html buildExplanationTutorPrompt html buildFactorByFactorInteractionConfidenceIntervalRows html buildFactorByFactorNewData html buildFittedEquationContentUi html buildFittedEquationRoleSummaryUi html buildFittedQuantityLabel html buildFormattedPromptQuantityBlock html buildGlmTeachingNotation html buildInitialExampleLoadStatus html buildInitialPackageScanStatus html buildInterpretationModeLabel html buildInvalidCustomContrastWeightMessage html buildLinearCombinationInterval html buildLinearCombinationText html buildLinearCombinationVarianceText html buildLinearModelBinaryFactorRecodingMessage html buildLmExplanationCacheKey html buildLmTermEvidencePromptBlock html buildLoadDataFirstMessage html buildLoadedExampleStatus html buildLoadingExampleChoice html buildLogisticCharacterResponseMessage html buildLogisticFactorResponseMessage html buildLogisticNumericResponseMessage html buildLogisticUnsupportedResponseMessage html buildMetricDiagnosisSummary html buildMetricEvidenceSummary html buildMissingProviderStartupMessage html buildMissingSeparatorMessage html buildModelConfidenceIntervalData html buildModelConfidenceIntervalRowChoices html buildModelConfidenceIntervalTeachingNote html buildModelExplanationAudit html buildModelExplanationAuditCoefficientTable html buildModelExplanationAuditConfidenceIntervals html buildModelExplanationAuditEvidenceTable html buildModelExplanationAuditNumericAnchor html buildModelExplanationAuditOverview html buildModelExplanationAuditPromptInputs html buildModelExplanationAuditPromptRules html buildModelExplanationAuditReferenceLevels html buildModelExplanationAuditScaleInfo html buildModelExplanationAuditVariableTransformations html buildModelFollowupPromptBlock html buildModelNumericAnchorInfo html buildModelPlotData html buildModelPlotDownloadFilename html buildModelPlotLabels html buildModelPlotSummaryText html buildModelPlotTeachingNote html buildModelPlotTypeChoices html buildNewDataDifferenceWeights html buildNoContrastPairsMessage html buildNoContrastSelectionMessage html buildNoDataFrameInRdaMessage html buildNoInteractionConfidenceIntervalRows html buildNoLanguageModelAvailableMessage html buildNoPackageDatasetsStatus html buildNumericAnchorUiNote html buildNumericFactorCancelLabel html buildNumericFactorConfirmLabel html buildNumericFactorConfirmMessage html buildNumericFactorConfirmTitle html buildOtherBaseSettingsText html buildPackageDatasetCheckingStatus html buildPackageDatasetChoiceStatus html buildPackageDatasetEmptyChoiceLabel html buildPackageDatasetEmptyStatus html buildPackageDatasetFindingMessage html buildPackageDatasetFoundStatus html buildPackageDatasetLoadFailedMessage html buildPackageDatasetPendingScanStatus html buildPackageListUpdatingStatus html buildPackageScanCompleteStatus html buildPoissonResponseWarningMessage html buildPromptValidationGuardBlock html buildPromptValidationGuardTargets html buildProvideDataContextHelpText html buildProvideDataContextPlaceholder html buildProvideDataContextTitle html buildProviderCredentialGuidance html buildProviderCredentialStatusLines html buildProviderSettingsState html buildProviderSettingsStatusLines html buildResponseBackTransformationAvailabilityNote html buildResponseBackTransformationModeGuidance html buildResponseBackTransformationPayload html buildResponseBackTransformationPromptBlock html buildResponseBackTransformationRows html buildResponseScaleControlPromptBlock html buildS20xPackageMissingChoiceLabel html buildS20xPackageMissingStatus html buildSameContrastLevelsMessage html buildScalePhrasingRules html buildSecondaryConfidenceIntervalColumns html buildSelectedObjectNotDataFrameMessage html buildSimpleInteractionConfidenceIntervalRows html buildSimpleInteractionSlopeWeights html buildStartupDataChoicesMessage html buildTooManyPredictorsMessage html buildUnknownChatProviderMessage html buildUnknownModelTypeMessage html buildUnsupportedUploadFileTypeMessage html buildVarSummary html buildVariableTransformationPromptBlock html buildWmfmComparisonPairs html buildWmfmExplanationAuditSupportNotes html buildWmfmLanguageContractText html buildWmfmLlmScoringCacheKey html buildWmfmLlmScoringSystemPrompt html buildWmfmLlmScoringUserPrompt html buildWmfmProviderModelLabel html buildWmfmProviderReadinessLabel html buildWmfmProviderRegistryRows html buildWmfmProviderSetupPolicyText html buildWmfmRunRecord html buildWmfmScoreComparison html chooseExplanationAnchor html chooseFactorLayout html chooseModelNumericReference html chooseModelPlotPointAlpha html classifyEffectScaleClaim html classifyExplanationClaimType html classifyMetricDisagreement html classifyModelConfidenceIntervalPlan html classifyModelPlotFamily html classifyWmfmScoreDisagreement html cleanExplanationText html closeWmfmProgressTracker html collapseTeachingNames html compare html compare.wmfmGrade html compare.wmfmScores html completeConfidenceIntervalNewData html composeWmfmPrompt html computeDiagnosisPriorityScore html computeFactorOnlyContrast html computeMeanCi html computeWeightedKappa html computeWmfmLlmJobCount html convertModelPlotResponse html countWmfmSentences html countWmfmWords html createAppServerObserverDependencies html createAppServerReactiveState html createVariableTransformationRecord html deparseOneLine html deriveMetricComparisonDataFromScores html describeField html describeField.wmfmRuns html describeField.wmfmScores html describeWmfmConfigLocation html describeWmfmField html describeWmfmProviderStatus html detectConfidenceIntervalModelFramework html detectDeveloperScoringFactorPredictors html detectDeveloperScoringInteractionTerms html detectImplicitComparison html detectRangeExpression html detectRespTransform html detectWmfmPattern html diagnose html diagnose.wmfmScores html diagnoseExplanationSurfaceProcessing html dot-env_cache html drawModelPlot html editWmfmConfig html emptyResponseBackTransformationPayload html emptyResponseBackTransformationTable html emptyVariableTransformationAuditTable html encodeAnalysisRecipeString html enforceWmfmLlmJobGuard html enrichConfidenceIntervalDisplayTable html ensureAnchoredFactorComparisonText html ensureS20xInstalled html explainWmfmFieldScore html extractConfidenceIntervalOutcomeLevel html extractDeveloperScoringInteractionInfo html extractMetricDiagnosisContext html extractResponseNounPhraseFromDoc html extractSourceVariables html extractWmfmText html fillMissingPredictors html filterAnovaTermRows html filterConfidenceIntervalRows html filterExplanationCoefficientPayloadByAdjustmentPolicy html filterExplanationPayloadForAdjustmentVariables html filterSummaryCoefficientRows html findDeveloperScoringJsonUnsafePaths html findExplanationSurfaceIssues html findModelConfidenceIntervalDetail html finishWmfmCliStageTracker html firstSourceVariable html fmt3 html formatBadExplanationOutput html formatBaseSettingForConfidenceIntervals html formatBinomialOddsLabel html formatBinomialProbabilityLabel html formatConfidenceIntervalNumber html formatDeveloperScoringDuration html formatEquationNumber html formatExplanationAnchor html formatExplanationAnchorInfo html formatExplanationConfidenceInterval html formatExplanationMultiplier html formatExplanationNumber html formatExplanationOdds html formatExplanationProbability html formatExplanationQuantity html formatExplanationQuantityInterval html formatSummaryValue html formatVariableTransformationParameters html formatWmfmElapsedTime html formatWmfmEquationTableLines html formatWmfmSeconds html formulaExpressionsMatch html generateBadExplanation html generateBadExplanationWithLlm html getAdjustedPrimaryEffectSummary html getAdjustmentCheckboxOnChangeScript html getAdjustmentRelatedTermsForExplanation html getAdjustmentRoleMetadataForExplanation html getAllowedExplanationFindings html getAvailableBadExplanationTypes html getBinomialOutcomeLabels html getChatProvider html getConfidenceIntervalCriticalValue html getExplanationNarrativePolicy html getExplanationTeachingConfidenceLevelPercent html getExplanationTeachingConfidenceNote html getFactorOnlyPredictors html getFactorPredictors html getForbiddenNarrativeAxes html getFormulaVariableTransformations html getInstalledPackageRd html getInstalledPackagesWithData html getLogLogModelMetadata html getLogLogOriginalPredictorName html getMetricComparisonData html getModelAdjustmentVariables html getModelEquations html getModelResponseTransformationMode html getModelResponseTransformationRecord html getModelVariableTransformationRoles html getModelVariableTransformations html getPackageDatasetNames html getPackageNameFromDescription html getRdAliases html getS20xDocHtml html getS20xDocText html getSafeModelVcov html getWmfmClaimColorMap html getWmfmConfigDir html getWmfmConfigPath html getWmfmDummyChatProviderMessage html getWmfmExplanationAuditRequiredFields html getWmfmMetricRegistry html getWmfmProviderAdapter html getWmfmRunsClaimProfileData html getWmfmRunsClaimsData html getWmfmRunsTextMetricsData html grade html grade.wmfmModel html hasClaudeApiKey html hasExplicitWmfmProviderConfig html hasPackageDatasetContext html hasWmfmProviderCredentials html inferArithmeticTransformation html inferTransformationType html insertCiSectionBreakRows html inverseTypeForFunction html isAdjustmentRelatedOutputRow html isAnalysisRecipe html isDeveloperModeUiEnabled html isFactorOnlyModel html isFactorOnlyPredictorModel html isLmIdentityModel html isResponseDifferenceInverseSupported html isSupportedLogisticModel html isSupportedPoissonModel html isUsableResponseInverseType html isWmfmConfigCredentialStorageAllowed html isWmfmCredentialEntryAllowed html isWmfmDeployedApp html isWmfmDummyChatProvider html isWmfmProviderConfigurationEditable html isWmfmProviderReadyForStartup html isWmfmProviderSupported html joinEquationPieces html listBadExplanationTypes html listDiagnosableMetrics html listMetricComparisonMetrics html listPackagesWithDatasetMetadata html listWMFMEvaluationExamples html listWMFMExampleDetails html listWMFMExamples html listWmfmProviderAdapters html llmHelpers-internal html lmEquations html lmExplanation html lmToExplanationPrompt html lmToPrompt html makeDeveloperModePasswordHash html makeFactorOnlyPlot html makeFittedMeansData html makeMeanEquation html makeResponseBackTransformationRow html makeSafeEvalEnv html makeWmfmDeterministicCategoryColors html makeWmfmLegendLabels html mapConfidenceIntervalDisplayScale html mapConfidenceIntervalPrimaryScale html mapConfidenceIntervalSecondaryScale html mapExplanationZoomToFontSize html mapSingleExplanationClaim html modelConfidenceIntervals html newAnalysisRecipe html newWmfmCliStageTracker html newWmfmGrade html newWmfmGradeListObj html newWmfmModel html newWmfmProgressTracker html newWmfmScores html normaliseExplanationNumericString html normaliseNumericExpressions html normaliseResponseTransformationMode html normaliseVariableTransformations html normaliseWmfmCredentialEnvVar html normaliseWmfmExplanations html normaliseWmfmProviderProfile html normaliseWmfmScoringRoleVariables html normaliseWmfmText html nullCoalesce html orderWmfmAgreementMetrics html orderWmfmLegendValues html parseBadExplanationResponse html parseNaturalLogCall html parseSingleAssignment html parseWeightText html parseWmfmScoringJson html plot.metricComparisonData html plot.metricComparisonSummary html plot.wmfmRuns html plot.wmfmScoreComparison html plot.wmfmScoreStability html plot.wmfmScores html plotCiControlsUi html plotModelPlot html plotWmfmExplanationClaimHeatmap html plotWmfmScoreAgreementSummary html plotWmfmScoreHeatmap html postProcessApplyRule html postProcessConfidenceIntervalTerminology html postProcessEscapedDollarSigns html postProcessExplanationText html postProcessExtractNumericTokens html postProcessGrammarCleanup html postProcessIssueDataFrame html postProcessLogLogPercentageLanguage html postProcessLongSentencePatterns html postProcessModelMechanismLanguage html postProcessPreservesNumericTokens html postProcessSentenceOpenings html postProcessStudentFacingPolish html postProcessSurfaceIssueRules html postProcessUnitChangePhrasing html postProcessVerbalFractions html postProcessWhitespace html prepareNonSecretProviderConfig html print.metricComparisonSummary html print.summary.wmfmGrade html print.summary.wmfmGradeListObj html print.summary.wmfmRuns html print.wmfmBadExplanationAudit html print.wmfmEquationTable html print.wmfmExplanationAudit html print.wmfmExplanationSurfaceDiagnosis html print.wmfmGrade html print.wmfmGradeComparison html print.wmfmGradeListObj html print.wmfmMetricDiagnosis html print.wmfmScoreComparison html print.wmfmScoreStability html print.wmfmScoresDiagnosis html readWmfmConfig html readWmfmConfigCredential html readWmfmConfigPath html readWmfmRawConfig html rebuildWmfmRunRecords html registerAnalysisDownloadObserver html registerChatProviderObservers html registerContrastObservers html registerDataLoadObservers html registerDeveloperScoringGradingObservers html registerFitModelObservers html registerFittedEquationObservers html registerModelExplanationObservers html registerModelFormulaObservers html registerModelHelpObservers html registerModelOutputTabs html registerModelPlotObservers html registerModelSetupObservers html registerModelSummaryObservers html registerStartupDataChoiceObservers html removeExpressionWhitespace html removeWmfmConfigCredential html renderAdjustmentVariablesUi html renderAdjustmentVariablesUiFromInputs html renderAnalysisRecipeAnalysisQuarto html renderAnalysisRecipeAnovaChunk html renderAnalysisRecipeCodeChunk html renderAnalysisRecipeConfidenceIntervalChunk html renderAnalysisRecipeCoreQuarto html renderAnalysisRecipeDataChunk html renderAnalysisRecipeDiagnosticChunk html renderAnalysisRecipeModelChunk html renderAnalysisRecipeModelPlotChunk html renderAnalysisRecipePackageChunk html renderAnalysisRecipePreparationChunk html renderAnalysisRecipePreparationSection html renderAnalysisRecipeSummaryChunk html renderBucketVariableLabel html renderEquationCase html renderEquationCases html renderExplanationClaimEvidenceUi html renderExplanationTeachingSummaryUi html renderExplanationTutorUi html renderModelConfidenceIntervalDetailUi html renderModelConfidenceIntervalDetailsUi html renderModelExplanationAuditUi html renderOneWayTable html renderSafeExplanationHtml html renderTeachingSummaryText html renderTwoWayTable html renderVarSummaryUi html resetNonSecretProviderConfig html resolveBadExplanationSource html resolveDeveloperModePreference html resolveDeveloperScoringModelType html resolveMetricDiagnosisData html resolveModelPlotModel html resolveResponseNounPhrase html resolveWmfmActiveProviderProfile html resolveWmfmProviderConfig html resolveWmfmProviderCredential html resolveWmfmProviderCredentials html resolveWmfmProviderProfileById html responseBackTransformationUsesOriginalScale html restoreTransformedPredictorSources html runExample html runModel html runWMFMApp html runWMFMEvaluationSuite html runWmfmCliStage html safeWmfmScalar html sanitiseDeveloperScoringJsonValue html sanitizeAdjustmentVariables html saveDeveloperModePreference html saveNonSecretProviderConfig html score html score.wmfmGrade html score.wmfmGradeListObj html score.wmfmRuns html scoreDeveloperExplanation html scoreWmfmRepeatedRuns html scoreWmfmRunWithLlm html scoreWmfmRunsWithLlm html selectExplanationEvidenceForClaim html selectFlaggedMetricRuns html shouldShowAdjustmentOutputControls html spellOutSentenceStartNumber html splitExplanationIntoClaimUnits html stability html stability.wmfmScores html storeDeveloperModePasswordHash html substituteDerivedResponseInFormula html summariseBinaryAgreement html summariseContinuousAgreement html summariseDeveloperScoringAudit html summariseMetricComparison html summariseOrdinalAgreement html summary.wmfmGrade html summary.wmfmGradeListObj html summary.wmfmRuns html syncAdjustmentVariablesSelection html termInvolvesAdjustmentVariable html tokenizeExplanationClaimText html typeLmEquations html updateAnalysisRecipeSection html updateWmfmProgressTracker html validResponseVars html validateAnalysisRecipe html validateBadExplanationRequest html validateBadExplanationResponse html validateResponseVar html validateWmfmExplanationAudit html validateWmfmMetricRegistry html validateWmfmParsedScores html variableTransformationAuditRow html verifyDeveloperModePassword html wmfmConfigDir html wmfmConfigPath html wmfmProviderDefaults html wmfmProviderRegistry html writeAnalysisRecipeDownload html writeAnalysisRecipeQuarto html writeWmfmConfig html writeWmfmConfigCredential html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (WMFM)