* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘WMFM’ ...
** this is package ‘WMFM’ version ‘1.0.4’
** package ‘WMFM’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘WMFM’
finding HTML links ... done
addDerivedVariableToData html
addFactorByFactorDifferenceOfDifferencesRow
html
addFactorByFactorSimpleDifferenceRows html
addFittedQuantityRows html
addLinearFactorDifferenceRow html
addLinearTwoLevelFactorComparisonRow html
addLogisticFactorByFactorConditionalOddsRatioRows
html
addLogisticFactorByFactorRatioOfOddsRatiosRow
html
addLogisticTwoLevelFactorComparisonRow
html
addNumericEffectRow html
appServer html
appUI html
applyWmfmLlmScoresToRecord html
arithmeticTransformationInfo html
as.data.frame.wmfmScores html
attachResponseTransformationModeToModel
html
attachVariableTransformationsToModel html
auditBadExplanationGrading html
backTransformResponseDifferenceRow html
backTransformResponseDifferenceValues html
backTransformResponseRow html
backTransformResponseValues html
backtickNames html
buildAddDerivedVariableConfirmLabel html
buildAddDerivedVariableHelpText html
buildAddDerivedVariablePlaceholder html
buildAddDerivedVariableTitle html
buildAdjustmentExplanationScaffold html
buildAdjustmentMetadata html
buildAdjustmentScoringContextBlock html
buildAdjustmentScoringPolicy html
buildAdjustmentScoringRubricGuidance html
buildAdjustmentVariablePromptBlock html
buildAnchorAuditEntry html
buildAnchoredBaselinePromptBlock html
buildAppExplanation html
buildAppExplanationAudit html
buildAppModelOutputs html
buildAppOutputMessages html
buildAppTeachingTutorExplanation html
buildAverageContrastEmptyGroupMessage html
buildAverageContrastInvalidLevelMessage
html
buildAverageContrastOverlappingLevelMessage
html
buildBadExplanationInstructionBlock html
buildBadExplanationModelContext html
buildBadExplanationPlan html
buildBadExplanationPrompt html
buildBadExplanationReferenceLevels html
buildBadExplanationTypeGuide html
buildChatProviderConnectionFailedMessage
html
buildChatProviderSetMessage html
buildChatProviderStatus html
buildChooseExampleFirstMessage html
buildCoefficientOnlyConfidenceIntervalData
html
buildComparisonControlFactorSummary html
buildComparisonControlPromptBlock html
buildConfidenceIntervalBaseInfo html
buildConfidenceIntervalNotation html
buildConfidenceIntervalPrediction html
buildConfidenceIntervalSortKey html
buildContrastNewData html
buildCustomContrastTooFewWeightsMessage
html
buildCustomContrastWeightsMustSumToZeroMessage
html
buildDataContextClearedMessage html
buildDataContextSavedMessage html
buildDataDescriptionTitle html
buildDelimitedFileReadFailedMessage html
buildDerivedConfidenceIntervalData html
buildDerivedModeNote html
buildDeterministicEquationTable html
buildDeveloperModeIncorrectPasswordMessage
html
buildDeveloperModeLockedMessage html
buildDeveloperModeStatus html
buildDeveloperModeUnlockErrorStatus html
buildDeveloperModeUnlockedMessage html
buildDeveloperRepeatedScoringExport html
buildDeveloperRepeatedScoringRunTable html
buildDeveloperRepeatedScoringSummaryTable
html
buildDeveloperScoringGradeExport html
buildDeveloperScoringJsonPayload html
buildDeveloperScoringJsonText html
buildDeveloperScoringLossTable html
buildDeveloperScoringMetricTable html
buildDeveloperScoringObjectText html
buildDeveloperScoringProgressText html
buildDeveloperScoringSemanticEvidenceTable
html
buildDeveloperScoringSummaryTable html
buildDeveloperScoringWmfmModel html
buildDuplicateContrastPairMessage html
buildEligibleAdjustmentVariables html
buildEquationCases html
buildEquationComponentText html
buildEquationDisplayRoleMetadata html
buildEquationDisplayRoleSummary html
buildEquationSpec html
buildExampleReadyStatus html
buildExplanationClaimEvidenceMap html
buildExplanationClaimSupportNote html
buildExplanationClaimSupportNotes html
buildExplanationDeterministicQualityFlags
html
buildExplanationEvidenceInventory html
buildExplanationMapQualityFlags html
buildExplanationModelProfile html
buildExplanationProvenanceText html
buildExplanationRuleProfile html
buildExplanationSkeletonPromptBlock html
buildExplanationTeachingBaselineChoice
html
buildExplanationTeachingDataDescription
html
buildExplanationTeachingEvidenceTable html
buildExplanationTeachingInterpretationScale
html
buildExplanationTeachingMainEffectDescription
html
buildExplanationTeachingNumber html
buildExplanationTeachingOutcomeLabel html
buildExplanationTeachingResearchQuestionLink
html
buildExplanationTeachingSummary html
buildExplanationTeachingUncertaintySummary
html
buildExplanationTeachingVariableTransformationSummary
html
buildExplanationTeachingXChangeDescription
html
buildExplanationTutorPrompt html
buildFactorByFactorInteractionConfidenceIntervalRows
html
buildFactorByFactorNewData html
buildFittedEquationContentUi html
buildFittedEquationRoleSummaryUi html
buildFittedQuantityLabel html
buildFormattedPromptQuantityBlock html
buildGlmTeachingNotation html
buildInitialExampleLoadStatus html
buildInitialPackageScanStatus html
buildInterpretationModeLabel html
buildInvalidCustomContrastWeightMessage
html
buildLinearCombinationInterval html
buildLinearCombinationText html
buildLinearCombinationVarianceText html
buildLinearModelBinaryFactorRecodingMessage
html
buildLmExplanationCacheKey html
buildLmTermEvidencePromptBlock html
buildLoadDataFirstMessage html
buildLoadedExampleStatus html
buildLoadingExampleChoice html
buildLogisticCharacterResponseMessage html
buildLogisticFactorResponseMessage html
buildLogisticNumericResponseMessage html
buildLogisticUnsupportedResponseMessage
html
buildMetricDiagnosisSummary html
buildMetricEvidenceSummary html
buildMissingProviderStartupMessage html
buildMissingSeparatorMessage html
buildModelConfidenceIntervalData html
buildModelConfidenceIntervalRowChoices
html
buildModelConfidenceIntervalTeachingNote
html
buildModelExplanationAudit html
buildModelExplanationAuditCoefficientTable
html
buildModelExplanationAuditConfidenceIntervals
html
buildModelExplanationAuditEvidenceTable
html
buildModelExplanationAuditNumericAnchor
html
buildModelExplanationAuditOverview html
buildModelExplanationAuditPromptInputs
html
buildModelExplanationAuditPromptRules html
buildModelExplanationAuditReferenceLevels
html
buildModelExplanationAuditScaleInfo html
buildModelExplanationAuditVariableTransformations
html
buildModelFollowupPromptBlock html
buildModelNumericAnchorInfo html
buildModelPlotData html
buildModelPlotDownloadFilename html
buildModelPlotLabels html
buildModelPlotSummaryText html
buildModelPlotTeachingNote html
buildModelPlotTypeChoices html
buildNewDataDifferenceWeights html
buildNoContrastPairsMessage html
buildNoContrastSelectionMessage html
buildNoDataFrameInRdaMessage html
buildNoInteractionConfidenceIntervalRows
html
buildNoLanguageModelAvailableMessage html
buildNoPackageDatasetsStatus html
buildNumericAnchorUiNote html
buildNumericFactorCancelLabel html
buildNumericFactorConfirmLabel html
buildNumericFactorConfirmMessage html
buildNumericFactorConfirmTitle html
buildOtherBaseSettingsText html
buildPackageDatasetCheckingStatus html
buildPackageDatasetChoiceStatus html
buildPackageDatasetEmptyChoiceLabel html
buildPackageDatasetEmptyStatus html
buildPackageDatasetFindingMessage html
buildPackageDatasetFoundStatus html
buildPackageDatasetLoadFailedMessage html
buildPackageDatasetPendingScanStatus html
buildPackageListUpdatingStatus html
buildPackageScanCompleteStatus html
buildPoissonResponseWarningMessage html
buildPromptValidationGuardBlock html
buildPromptValidationGuardTargets html
buildProvideDataContextHelpText html
buildProvideDataContextPlaceholder html
buildProvideDataContextTitle html
buildProviderCredentialGuidance html
buildProviderCredentialStatusLines html
buildProviderSettingsState html
buildProviderSettingsStatusLines html
buildResponseBackTransformationAvailabilityNote
html
buildResponseBackTransformationModeGuidance
html
buildResponseBackTransformationPayload
html
buildResponseBackTransformationPromptBlock
html
buildResponseBackTransformationRows html
buildResponseScaleControlPromptBlock html
buildS20xPackageMissingChoiceLabel html
buildS20xPackageMissingStatus html
buildSameContrastLevelsMessage html
buildScalePhrasingRules html
buildSecondaryConfidenceIntervalColumns
html
buildSelectedObjectNotDataFrameMessage
html
buildSimpleInteractionConfidenceIntervalRows
html
buildSimpleInteractionSlopeWeights html
buildStartupDataChoicesMessage html
buildTooManyPredictorsMessage html
buildUnknownChatProviderMessage html
buildUnknownModelTypeMessage html
buildUnsupportedUploadFileTypeMessage html
buildVarSummary html
buildVariableTransformationPromptBlock
html
buildWmfmComparisonPairs html
buildWmfmExplanationAuditSupportNotes html
buildWmfmLanguageContractText html
buildWmfmLlmScoringCacheKey html
buildWmfmLlmScoringSystemPrompt html
buildWmfmLlmScoringUserPrompt html
buildWmfmProviderModelLabel html
buildWmfmProviderReadinessLabel html
buildWmfmProviderRegistryRows html
buildWmfmProviderSetupPolicyText html
buildWmfmRunRecord html
buildWmfmScoreComparison html
chooseExplanationAnchor html
chooseFactorLayout html
chooseModelNumericReference html
chooseModelPlotPointAlpha html
classifyEffectScaleClaim html
classifyExplanationClaimType html
classifyMetricDisagreement html
classifyModelConfidenceIntervalPlan html
classifyModelPlotFamily html
classifyWmfmScoreDisagreement html
cleanExplanationText html
closeWmfmProgressTracker html
collapseTeachingNames html
compare html
compare.wmfmGrade html
compare.wmfmScores html
completeConfidenceIntervalNewData html
composeWmfmPrompt html
computeDiagnosisPriorityScore html
computeFactorOnlyContrast html
computeMeanCi html
computeWeightedKappa html
computeWmfmLlmJobCount html
convertModelPlotResponse html
countWmfmSentences html
countWmfmWords html
createAppServerObserverDependencies html
createAppServerReactiveState html
createVariableTransformationRecord html
deparseOneLine html
deriveMetricComparisonDataFromScores html
describeField html
describeField.wmfmRuns html
describeField.wmfmScores html
describeWmfmConfigLocation html
describeWmfmField html
describeWmfmProviderStatus html
detectConfidenceIntervalModelFramework
html
detectDeveloperScoringFactorPredictors
html
detectDeveloperScoringInteractionTerms
html
detectImplicitComparison html
detectRangeExpression html
detectRespTransform html
detectWmfmPattern html
diagnose html
diagnose.wmfmScores html
diagnoseExplanationSurfaceProcessing html
dot-env_cache html
drawModelPlot html
editWmfmConfig html
emptyResponseBackTransformationPayload
html
emptyResponseBackTransformationTable html
emptyVariableTransformationAuditTable html
enforceWmfmLlmJobGuard html
enrichConfidenceIntervalDisplayTable html
ensureAnchoredFactorComparisonText html
ensureS20xInstalled html
explainWmfmFieldScore html
extractConfidenceIntervalOutcomeLevel html
extractDeveloperScoringInteractionInfo
html
extractMetricDiagnosisContext html
extractResponseNounPhraseFromDoc html
extractSourceVariables html
extractWmfmText html
fillMissingPredictors html
filterAnovaTermRows html
filterConfidenceIntervalRows html
filterExplanationCoefficientPayloadByAdjustmentPolicy
html
filterExplanationPayloadForAdjustmentVariables
html
filterSummaryCoefficientRows html
findDeveloperScoringJsonUnsafePaths html
findExplanationSurfaceIssues html
findModelConfidenceIntervalDetail html
finishWmfmCliStageTracker html
firstSourceVariable html
fmt3 html
formatBadExplanationOutput html
formatBaseSettingForConfidenceIntervals
html
formatBinomialOddsLabel html
formatBinomialProbabilityLabel html
formatConfidenceIntervalNumber html
formatDeveloperScoringDuration html
formatEquationNumber html
formatExplanationAnchor html
formatExplanationAnchorInfo html
formatExplanationConfidenceInterval html
formatExplanationMultiplier html
formatExplanationNumber html
formatExplanationOdds html
formatExplanationProbability html
formatExplanationQuantity html
formatExplanationQuantityInterval html
formatSummaryValue html
formatVariableTransformationParameters
html
formatWmfmElapsedTime html
formatWmfmEquationTableLines html
formatWmfmSeconds html
formulaExpressionsMatch html
generateBadExplanation html
generateBadExplanationWithLlm html
getAdjustedPrimaryEffectSummary html
getAdjustmentCheckboxOnChangeScript html
getAdjustmentRelatedTermsForExplanation
html
getAdjustmentRoleMetadataForExplanation
html
getAllowedExplanationFindings html
getAvailableBadExplanationTypes html
getBinomialOutcomeLabels html
getChatProvider html
getConfidenceIntervalCriticalValue html
getExplanationNarrativePolicy html
getExplanationTeachingConfidenceLevelPercent
html
getExplanationTeachingConfidenceNote html
getFactorOnlyPredictors html
getFactorPredictors html
getForbiddenNarrativeAxes html
getFormulaVariableTransformations html
getInstalledPackageRd html
getInstalledPackagesWithData html
getLogLogModelMetadata html
getLogLogOriginalPredictorName html
getMetricComparisonData html
getModelAdjustmentVariables html
getModelEquations html
getModelResponseTransformationMode html
getModelResponseTransformationRecord html
getModelVariableTransformationRoles html
getModelVariableTransformations html
getPackageDatasetNames html
getPackageNameFromDescription html
getRdAliases html
getS20xDocHtml html
getS20xDocText html
getSafeModelVcov html
getWmfmClaimColorMap html
getWmfmConfigDir html
getWmfmConfigPath html
getWmfmDummyChatProviderMessage html
getWmfmExplanationAuditRequiredFields html
getWmfmMetricRegistry html
getWmfmProviderAdapter html
getWmfmRunsClaimProfileData html
getWmfmRunsClaimsData html
getWmfmRunsTextMetricsData html
grade html
grade.wmfmModel html
hasClaudeApiKey html
hasExplicitWmfmProviderConfig html
hasPackageDatasetContext html
hasWmfmProviderCredentials html
inferArithmeticTransformation html
inferTransformationType html
insertCiSectionBreakRows html
inverseTypeForFunction html
isAdjustmentRelatedOutputRow html
isDeveloperModeUiEnabled html
isFactorOnlyModel html
isFactorOnlyPredictorModel html
isLmIdentityModel html
isResponseDifferenceInverseSupported html
isSupportedLogisticModel html
isSupportedPoissonModel html
isUsableResponseInverseType html
isWmfmConfigCredentialStorageAllowed html
isWmfmCredentialEntryAllowed html
isWmfmDeployedApp html
isWmfmDummyChatProvider html
isWmfmProviderConfigurationEditable html
isWmfmProviderReadyForStartup html
isWmfmProviderSupported html
joinEquationPieces html
listBadExplanationTypes html
listDiagnosableMetrics html
listMetricComparisonMetrics html
listPackagesWithDatasetMetadata html
listWMFMExampleDetails html
listWMFMExamples html
listWmfmProviderAdapters html
llmHelpers-internal html
lmEquations html
lmExplanation html
lmToExplanationPrompt html
lmToPrompt html
makeDeveloperModePasswordHash html
makeFactorOnlyPlot html
makeFittedMeansData html
makeMeanEquation html
makeResponseBackTransformationRow html
makeSafeEvalEnv html
makeWmfmDeterministicCategoryColors html
makeWmfmLegendLabels html
mapConfidenceIntervalDisplayScale html
mapConfidenceIntervalPrimaryScale html
mapConfidenceIntervalSecondaryScale html
mapExplanationZoomToFontSize html
mapSingleExplanationClaim html
newWmfmCliStageTracker html
newWmfmGrade html
newWmfmGradeListObj html
newWmfmModel html
newWmfmProgressTracker html
newWmfmScores html
normaliseExplanationNumericString html
normaliseNumericExpressions html
normaliseResponseTransformationMode html
normaliseVariableTransformations html
normaliseWmfmCredentialEnvVar html
normaliseWmfmExplanations html
normaliseWmfmProviderProfile html
normaliseWmfmScoringRoleVariables html
normaliseWmfmText html
nullCoalesce html
orderWmfmAgreementMetrics html
orderWmfmLegendValues html
parseBadExplanationResponse html
parseNaturalLogCall html
parseSingleAssignment html
parseWeightText html
parseWmfmScoringJson html
plot.metricComparisonData html
plot.metricComparisonSummary html
plot.wmfmRuns html
plot.wmfmScoreComparison html
plot.wmfmScoreStability html
plot.wmfmScores html
plotCiControlsUi html
plotModelPlot html
plotWmfmExplanationClaimHeatmap html
plotWmfmScoreAgreementSummary html
plotWmfmScoreHeatmap html
postProcessApplyRule html
postProcessConfidenceIntervalTerminology
html
postProcessEscapedDollarSigns html
postProcessExplanationText html
postProcessExtractNumericTokens html
postProcessGrammarCleanup html
postProcessIssueDataFrame html
postProcessLogLogPercentageLanguage html
postProcessLongSentencePatterns html
postProcessModelMechanismLanguage html
postProcessPreservesNumericTokens html
postProcessSentenceOpenings html
postProcessStudentFacingPolish html
postProcessSurfaceIssueRules html
postProcessUnitChangePhrasing html
postProcessVerbalFractions html
postProcessWhitespace html
prepareNonSecretProviderConfig html
print.metricComparisonSummary html
print.summary.wmfmGrade html
print.summary.wmfmGradeListObj html
print.summary.wmfmRuns html
print.wmfmBadExplanationAudit html
print.wmfmEquationTable html
print.wmfmExplanationAudit html
print.wmfmExplanationSurfaceDiagnosis html
print.wmfmGrade html
print.wmfmGradeComparison html
print.wmfmGradeListObj html
print.wmfmMetricDiagnosis html
print.wmfmScoreComparison html
print.wmfmScoreStability html
print.wmfmScoresDiagnosis html
readWmfmConfig html
readWmfmConfigCredential html
readWmfmConfigPath html
readWmfmRawConfig html
rebuildWmfmRunRecords html
registerChatProviderObservers html
registerContrastObservers html
registerDataLoadObservers html
registerDeveloperScoringGradingObservers
html
registerFitModelObservers html
registerFittedEquationObservers html
registerModelExplanationObservers html
registerModelFormulaObservers html
registerModelHelpObservers html
registerModelOutputTabs html
registerModelPlotObservers html
registerModelSetupObservers html
registerModelSummaryObservers html
registerStartupDataChoiceObservers html
removeExpressionWhitespace html
removeWmfmConfigCredential html
renderAdjustmentVariablesUi html
renderAdjustmentVariablesUiFromInputs html
renderBucketVariableLabel html
renderEquationCase html
renderEquationCases html
renderExplanationClaimEvidenceUi html
renderExplanationTeachingSummaryUi html
renderExplanationTutorUi html
renderModelConfidenceIntervalDetailUi html
renderModelConfidenceIntervalDetailsUi
html
renderModelExplanationAuditUi html
renderOneWayTable html
renderSafeExplanationHtml html
renderTeachingSummaryText html
renderTwoWayTable html
renderVarSummaryUi html
resetNonSecretProviderConfig html
resolveBadExplanationSource html
resolveDeveloperModePreference html
resolveDeveloperScoringModelType html
resolveMetricDiagnosisData html
resolveModelPlotModel html
resolveResponseNounPhrase html
resolveWmfmActiveProviderProfile html
resolveWmfmProviderConfig html
resolveWmfmProviderCredential html
resolveWmfmProviderCredentials html
resolveWmfmProviderProfileById html
responseBackTransformationUsesOriginalScale
html
runExample html
runModel html
runWMFMApp html
runWmfmCliStage html
safeWmfmScalar html
sanitiseDeveloperScoringJsonValue html
sanitizeAdjustmentVariables html
saveDeveloperModePreference html
saveNonSecretProviderConfig html
score html
score.wmfmGrade html
score.wmfmGradeListObj html
score.wmfmRuns html
scoreDeveloperExplanation html
scoreWmfmRepeatedRuns html
scoreWmfmRunWithLlm html
scoreWmfmRunsWithLlm html
selectExplanationEvidenceForClaim html
selectFlaggedMetricRuns html
shouldShowAdjustmentOutputControls html
spellOutSentenceStartNumber html
splitExplanationIntoClaimUnits html
stability html
stability.wmfmScores html
storeDeveloperModePasswordHash html
substituteDerivedResponseInFormula html
summariseBinaryAgreement html
summariseContinuousAgreement html
summariseDeveloperScoringAudit html
summariseMetricComparison html
summariseOrdinalAgreement html
summary.wmfmGrade html
summary.wmfmGradeListObj html
summary.wmfmRuns html
syncAdjustmentVariablesSelection html
termInvolvesAdjustmentVariable html
tokenizeExplanationClaimText html
typeLmEquations html
updateWmfmProgressTracker html
validResponseVars html
validateBadExplanationRequest html
validateBadExplanationResponse html
validateResponseVar html
validateWmfmExplanationAudit html
validateWmfmMetricRegistry html
validateWmfmParsedScores html
variableTransformationAuditRow html
verifyDeveloperModePassword html
wmfmConfigDir html
wmfmConfigPath html
wmfmProviderDefaults html
wmfmProviderRegistry html
writeWmfmConfig html
writeWmfmConfigCredential html
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (WMFM)