* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘VGAM’ ...
** package ‘VGAM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-25) 13.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-25) 13.2.0’
make[1]: Entering directory '/tmp/RtmpfxQALm/R.INSTALL192d2138c10d61/VGAM/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c VGAM_init.c -o VGAM_init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c caqo3.c -o caqo3.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c ei.f -o ei.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c fgam.f -o fgam.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c gautr.c -o gautr.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c lerchphi.c -o lerchphi.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c lms.f -o lms.o
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gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c muxr3.c -o muxr3.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c rgam.f -o rgam.o
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   61 | 23008 continue
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rgam.f:49:5:

   49 | 23001 ayfnwr1v = ayfnwr1v+1
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rgam.f:403:5:

  403 | 23101 gp1jxzuh = gp1jxzuh-1
      |     1
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  407 | 23099 continue
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rgam.f:387:5:

  387 | 23096 gp1jxzuh = gp1jxzuh+1
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  391 | 23094 continue
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gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c rgam3.c -o rgam3.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c specfun3.c -o specfun3.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c tyeepolygamma.f -o tyeepolygamma.o
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gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c tyeepolygamma3.c -o tyeepolygamma3.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c vdigami.f -o vdigami.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c veigen.f -o veigen.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c vgam.f -o vgam.o
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  746 | 23266 gp1jxzuh=gp1jxzuh+1
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  737 | 23263 gp1jxzuh=gp1jxzuh+1
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  740 | 23260 kij0gwer=kij0gwer-1
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  724 | 23253 lsvdbx3tk=lsvdbx3tk+1
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  712 | 23250 gp1jxzuh=gp1jxzuh+1
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  704 | 23247 gp1jxzuh=gp1jxzuh+1
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  715 | 23244 lsvdbx3tk=lsvdbx3tk+1
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vgam.f:751:5:

  751 | 23239 ayfnwr1v = ayfnwr1v-1
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gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c vgam3.c -o vgam3.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c vlinpack1.f -o vlinpack1.o
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gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c vlinpack2.f -o vlinpack2.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c vlinpack3.f -o vlinpack3.o
gfortran-13  -fpic  -g -O2 -Wall -mtune=native  -c vmux.f -o vmux.o
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  441 | 23128 kij0gwer=kij0gwer+1
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  545 | 23148 kij0gwer=kij0gwer+1
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gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c vmux3.c -o vmux3.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c zeta3.c -o zeta3.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o VGAM.so VGAM_init.o caqo3.o ei.o fgam.o gautr.o lerchphi.o lms.o muxr3.o rgam.o rgam3.o specfun3.o tyeepolygamma.o tyeepolygamma3.o vdigami.o veigen.o vgam.o vgam3.o vlinpack1.o vlinpack2.o vlinpack3.o vmux.o vmux3.o zeta3.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpfxQALm/R.INSTALL192d2138c10d61/VGAM/src'
make[1]: Entering directory '/tmp/RtmpfxQALm/R.INSTALL192d2138c10d61/VGAM/src'
make[1]: Leaving directory '/tmp/RtmpfxQALm/R.INSTALL192d2138c10d61/VGAM/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-VGAM/00new/VGAM/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘VGAM’
    finding HTML links ... done
    A1A2A3                                  html  
    AA.Aa.aa                                html  
    AB.Ab.aB.ab                             html  
    ABO                                     html  
    AICvlm                                  html  
    AR1                                     html  
    AR1EIM                                  html  
    AR1UC                                   html  
    BICvlm                                  html  
    CM.equid                                html  
    Coef                                    html  
    Coef.qrrvglm-class                      html  
    Coef.qrrvglm                            html  
    Coef.rrvglm-class                       html  
    Coef.rrvglm                             html  
    Coef.vlm                                html  
    CommonVGAMffArguments                   html  
    Huggins89.t1                            html  
    Influence                               html  
    Inv.gaussian                            html  
    KLDvglm                                 html  
    Links                                   html  
    MNSs                                    html  
    Max                                     html  
    N1binomUC                               html  
    N1binomial                              html  
    N1poisUC                                html  
    N1poisson                               html  
    Opt                                     html  
    ParetoUC                                html  
    QvarUC                                  html  
    R2latvar                                html  
    Rank                                    html  
    Rcim                                    html  
    SURff                                   html  
    Select                                  html  
    SurvS4-class                            html  
    SurvS4                                  html  
    TICvlm                                  html  
    Tol                                     html  
    Trunc                                   html  
    UtilitiesVGAM                           html  
    V1                                      html  
    V2                                      html  
    VGAM-package                            html  
    acat                                    html  
    alaplace3                               html  
    alaplaceUC                              html  
    alogitlink                              html  
    alteredvglm                             html  
    amlbinomial                             html  
    amlexponential                          html  
    amlnormal                               html  
    amlpoisson                              html  
    anovavglm                               html  
    asinlink                                html  
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    auxposbernoulli.t                       html  
    backPain                                html  
    beggs                                   html  
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    benfUC                                  html  
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    betaR                                   html  
    betabinomUC                             html  
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    betabinomialff                          html  
    betaff                                  html  
    betageomUC                              html  
    betageometric                           html  
    betanormUC                              html  
    betaprime                               html  
    biamhcop                                html  
    biamhcopUC                              html  
    biclaytoncop                            html  
    biclaytoncopUC                          html  
    bifgmcop                                html  
    bifgmcopUC                              html  
    bifgmexp                                html  
    bifrankcop                              html  
    bifrankcopUC                            html  
    bigumbelIexp                            html  
    bilogisUC                               html  
    bilogistic                              html  
    binom2.or                               html  
    binom2.orUC                             html  
    binom2.rho                              html  
    binom2.rhoUC                            html  
    binomialff                              html  
    binormal                                html  
    binormalUC                              html  
    binormalcop                             html  
    binormcopUC                             html  
    biplackettcop                           html  
    biplackettcopUC                         html  
    biplot-methods                          html  
    bisa                                    html  
    bisaUC                                  html  
    bistudentt                              html  
    bistudenttUC                            html  
    bmi.nz                                  html  
    borel.tanner                            html  
    bortUC                                  html  
    brat                                    html  
    bratUC                                  html  
    bratt                                   html  
    budworm                                 html  
    calibrate-methods                       html  
    calibrate                               html  
    calibrate.qrrvglm                       html  
    calibrate.qrrvglm.control               html  
    calibrate.rrvglm                        html  
    calibrate.rrvglm.control                html  
    cao                                     html  
    cao.control                             html  
    cardUC                                  html  
    cardioid                                html  
    cauchitlink                             html  
    cauchy                                  html  
    cdf.lmscreg                             html  
    cens.gumbel                             html  
    cens.normal                             html  
    cens.poisson                            html  
    cfibrosis                               html  
    cgo                                     html  
    chest.nz                                html  
    chinese.nz                              html  
    chisq                                   html  
    clo                                     html  
    clogloglink                             html  
    coalminers                              html  
    coefvgam                                html  
    coefvlm                                 html  
    concoef-methods                         html  
    concoef                                 html  
    confintvglm                             html  
    constraints                             html  
    cops                                    html  
    corbet                                  html  
    cqo                                     html  
    crashes                                 html  
    cratio                                  html  
    cumulative                              html  
    dagum                                   html  
    dagumUC                                 html  
    deermice                                html  
    deplot.lmscreg                          html  
    depvar                                  html  
    df.residual                             html  
    dgaitdplot                              html  
    diffzeta                                html  
    diffzetaUC                              html  
    dirichlet                               html  
    dirmul.old                              html  
    dirmultinomial                          html  
    double.cens.normal                      html  
    double.expbinomial                      html  
    drop1                                   html  
    ducklings                               html  
    eCDF                                    html  
    eexpUC                                  html  
    enormUC                                 html  
    enzyme                                  html  
    erf                                     html  
    erlang                                  html  
    eunifUC                                 html  
    expexpff                                html  
    expexpff1                               html  
    expgeometric                            html  
    expgeometricUC                          html  
    expint3                                 html  
    explink                                 html  
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    explogff                                html  
    exponential                             html  
    exppoisson                              html  
    exppoissonUC                            html  
    extbetabinomUC                          html  
    extbetabinomial                         html  
    extlogF.UC                              html  
    extlogF1                                html  
    familyname                              html  
    felix                                   html  
    felixUC                                 html  
    fff                                     html  
    fill1                                   html  
    finney44                                html  
    fisherzlink                             html  
    fisk                                    html  
    fiskUC                                  html  
    fittedvlm                               html  
    fix.crossing                            html  
    flourbeetle                             html  
    foldnormUC                              html  
    foldnormal                              html  
    foldsqrtlink                            html  
    formulavlm                              html  
    frechet                                 html  
    frechetUC                               html  
    freund61                                html  
    gaitdbinomUC                            html  
    gaitdlog                                html  
    gaitdlogUC                              html  
    gaitdnbinomUC                           html  
    gaitdnbinomial                          html  
    gaitdpoisUC                             html  
    gaitdpoisson                            html  
    gaitdzeta                               html  
    gaitdzetaUC                             html  
    gamma1                                  html  
    gamma2                                  html  
    gammaR                                  html  
    gammaff.mm                              html  
    gammahyperbola                          html  
    garma                                   html  
    genbetaII                               html  
    genbetaIIUC                             html  
    gengamma                                html  
    gengammaUC                              html  
    genpois0UC                              html  
    genpois1UC                              html  
    genpoisson0                             html  
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    genpoisson2                             html  
    genrayleigh                             html  
    genrayleighUC                           html  
    gensh                                   html  
    genshUC                                 html  
    geometric                               html  
    get.smart                               html  
    get.smart.prediction                    html  
    gev                                     html  
    gevUC                                   html  
    gew                                     html  
    goffset                                 html  
    gompertz                                html  
    gompertzUC                              html  
    gpd                                     html  
    gpdUC                                   html  
    grain.us                                html  
    grc                                     html  
    gumbel                                  html  
    gumbelII                                html  
    gumbelIIUC                              html  
    gumbelUC                                html  
    guplot                                  html  
    has.intercept                           html  
    hatvalues                               html  
    hdeff                                   html  
    hdeffsev                                html  
    hormone                                 html  
    hspider                                 html  
    huber                                   html  
    huberUC                                 html  
    hunua                                   html  
    hurea                                   html  
    hureaUC                                 html  
    hyperg                                  html  
    hypersecant                             html  
    hzeta                                   html  
    hzetaUC                                 html  
    iam                                     html  
    identitylink                            html  
    inv.binomial                            html  
    inv.gaussianff                          html  
    inv.lomax                               html  
    inv.lomaxUC                             html  
    inv.paralogistic                        html  
    inv.paralogisticUC                      html  
    is.buggy                                html  
    is.crossing                             html  
    is.parallel                             html  
    is.smart                                html  
    is.zero                                 html  
    kendall.tau                             html  
    kumar                                   html  
    kumarUC                                 html  
    lakeO                                   html  
    lambertW                                html  
    laplace                                 html  
    laplaceUC                               html  
    latvar                                  html  
    leipnik                                 html  
    lerch                                   html  
    leukemia                                html  
    levy                                    html  
    lgammaUC                                html  
    lgammaff                                html  
    lindUC                                  html  
    lindley                                 html  
    linkfunvlm                              html  
    lino                                    html  
    linoUC                                  html  
    lirat                                   html  
    lms.bcg                                 html  
    lms.bcn                                 html  
    lms.yjn                                 html  
    log1mexp                                html  
    logF                                    html  
    logF.UC                                 html  
    logLikvlm                               html  
    logUC                                   html  
    logclink                                html  
    logff                                   html  
    logistic                                html  
    logitlink                               html  
    logitoffsetlink                         html  
    loglapUC                                html  
    loglaplace                              html  
    loglinb2                                html  
    loglinb3                                html  
    loglink                                 html  
    logloglink                              html  
    lognormal                               html  
    logofflink                              html  
    lomax                                   html  
    lomaxUC                                 html  
    lpossums                                html  
    lqnorm                                  html  
    lrt.stat                                html  
    lrtest                                  html  
    lvplot                                  html  
    lvplot.qrrvglm                          html  
    lvplot.rrvglm                           html  
    machinists                              html  
    makeham                                 html  
    makehamUC                               html  
    margeff                                 html  
    marital.nz                              html  
    maxwell                                 html  
    maxwellUC                               html  
    mccullagh89                             html  
    meangaitd                               html  
    melbmaxtemp                             html  
    meplot                                  html  
    micmen                                  html  
    mills.ratio                             html  
    mix2exp                                 html  
    mix2normal                              html  
    mix2poisson                             html  
    model.framevlm                          html  
    model.matrixqrrvglm                     html  
    model.matrixvlm                         html  
    moffset                                 html  
    multilogitlink                          html  
    multinomial                             html  
    nakagami                                html  
    nakagamiUC                              html  
    nbcanlink                               html  
    negbinomial                             html  
    negbinomial.size                        html  
    normal.vcm                              html  
    notdocumentedyet                        html  
    nparamvglm                              html  
    olym                                    html  
    ordpoisson                              html  
    ordsup                                  html  
    oxtemp                                  html  
    paralogistic                            html  
    paralogisticUC                          html  
    paretoIV                                html  
    paretoIVUC                              html  
    paretoff                                html  
    perks                                   html  
    perksUC                                 html  
    persp.qrrvglm                           html  
    pgamma.deriv                            html  
    pgamma.deriv.unscaled                   html  
    plotdeplot.lmscreg                      html  
    plotdgaitd                              html  
    plotqrrvglm                             html  
    plotqtplot.lmscreg                      html  
    plotrcim0                               html  
    plotvgam                                html  
    plotvgam.control                        html  
    plotvglm                                html  
    pneumo                                  html  
    poisson.points                          html  
    poisson.pointsUC                        html  
    poissonff                               html  
    polonoUC                                html  
    posbernUC                               html  
    posbernoulli.b                          html  
    posbernoulli.t                          html  
    posbernoulli.tb                         html  
    posbinomial                             html  
    posgeomUC                               html  
    posnegbinomial                          html  
    posnormUC                               html  
    posnormal                               html  
    pospoisson                              html  
    powerlink                               html  
    prats                                   html  
    predictqrrvglm                          html  
    predictvglm                             html  
    prentice74                              html  
    prinia                                  html  
    probitlink                              html  
    profilevglm                             html  
    propodds                                html  
    prplot                                  html  
    put.smart                               html  
    qrrvglm.control                         html  
    qtplot.gumbel                           html  
    qtplot.lmscreg                          html  
    qvar                                    html  
    rayleigh                                html  
    rayleighUC                              html  
    rcqo                                    html  
    rdiric                                  html  
    rec.exp1                                html  
    rec.normal                              html  
    reciprocallink                          html  
    residualsvglm                           html  
    rhobitlink                              html  
    riceUC                                  html  
    riceff                                  html  
    rigff                                   html  
    rlplot.gevff                            html  
    rootogram4vglm                          html  
    round2                                  html  
    rrar                                    html  
    rrvglm-class                            html  
    rrvglm                                  html  
    rrvglm.control                          html  
    rrvglm.optim.control                    html  
    ruge                                    html  
    s                                       html  
    sc.studentt2                            html  
    sc.t2UC                                 html  
    score.stat                              html  
    seglines                                html  
    seq2binomial                            html  
    setup.smart                             html  
    simplex                                 html  
    simplexUC                               html  
    simulate.vlm                            html  
    sinmad                                  html  
    sinmadUC                                html  
    skellam                                 html  
    skellamUC                               html  
    skewnormUC                              html  
    skewnormal                              html  
    slash                                   html  
    slashUC                                 html  
    sloglink                                html  
    sm.os                                   html  
    sm.ps                                   html  
    smart.expression                        html  
    smart.mode.is                           html  
    smartpred                               html  
    specialsvglm                            html  
    spikeplot                               html  
    sratio                                  html  
    step4vglm                               html  
    studentt                                html  
    summarydrrvglm                          html  
    summarypvgam                            html  
    summaryvgam                             html  
    summaryvglm                             html  
    tobit                                   html  
    tobitUC                                 html  
    topple                                  html  
    toppleUC                                html  
    toxop                                   html  
    triangle                                html  
    triangleUC                              html  
    trim.constraints                        html  
    trinormal                               html  
    trinormalUC                             html  
    trplot                                  html  
    trplot.qrrvglm                          html  
    truncparetoUC                           html  
    truncweibull                            html  
    ucberk                                  html  
    undocumented-methods                    html  
    uninormal                               html  
    vcovvlm                                 html  
    venice                                  html  
    vgam-class                              html  
    vgam                                    html  
    vgam.control                            html  
    vglm-class                              html  
    vglm                                    html  
    vglm.control                            html  
    vglmff-class                            html  
    vonmises                                html  
    vplot.profile                           html  
    vsmooth.spline                          html  
    waitakere                               html  
    wald.stat                               html  
    waldff                                  html  
    weibull.mean                            html  
    weibullR                                html  
    weightsvglm                             html  
    wine                                    html  
    wrapup.smart                            html  
    yeo.johnson                             html  
    yulesimon                               html  
    yulesimonUC                             html  
    zabinomUC                               html  
    zabinomial                              html  
    zageomUC                                html  
    zageometric                             html  
    zanegbinUC                              html  
    zanegbinomial                           html  
    zapoisUC                                html  
    zapoisson                               html  
    zero                                    html  
    zeta                                    html  
    zetaUC                                  html  
    zetaff                                  html  
    zibinomUC                               html  
    zibinomial                              html  
    zigeomUC                                html  
    zigeometric                             html  
    zinegbinUC                              html  
    zinegbinomial                           html  
    zipebcom                                html  
    zipf                                    html  
    zipfUC                                  html  
    zipfmbUC                                html  
    zipoisUC                                html  
    zipoisson                               html  
    zoabetaR                                html  
    zoabetaUC                               html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘VGAM’ as ‘VGAM_1.1-11_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (VGAM)