* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘UtilityFrailtyPH12’ ...
** package ‘UtilityFrailtyPH12’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
using C++11
make[1]: Entering directory '/tmp/RtmpQy2PxB/R.INSTALL2d7e08f4e8ec3/UtilityFrailtyPH12/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c PH12UT1.cpp -o PH12UT1.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/armadillo:26,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
                 from PH12UT1.cpp:5:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: ‘#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed’
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |                                                                                      ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: ‘#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead’
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |                                                                           ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: ‘#pragma message: INFO: see the documentation for details’
  329 |   #pragma message ("INFO: see the documentation for details")
      |                                                             ^
PH12UT1.cpp: In function ‘double Like2(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, int)’:
PH12UT1.cpp:109:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  109 |   for(m=0;m<Y.n_rows;m++){
      |           ~^~~~~~~~~
PH12UT1.cpp:120:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  120 |     for(m=0; m<Y.n_rows;m++){
      |              ~^~~~~~~~~
PH12UT1.cpp: In function ‘double GetMin(arma::vec)’:
PH12UT1.cpp:224:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  224 |   for(j=1;j<DESIRE.n_rows;j++){
      |           ~^~~~~~~~~~~~~~
PH12UT1.cpp: In function ‘Rcpp::List UTEFFTOX(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, int)’:
PH12UT1.cpp:448:9: warning: unused variable ‘epprop’ [-Wunused-variable]
  448 |  double epprop = 0; //proposal values for epsilon
      |         ^~~~~~
PH12UT1.cpp:449:9: warning: unused variable ‘muprop’ [-Wunused-variable]
  449 | double  muprop = 0; //proposal for mu_epsilon
      |         ^~~~~~
PH12UT1.cpp:489:10: warning: unused variable ‘epEC’ [-Wunused-variable]
  489 |   double epEC = 1;
      |          ^~~~
PH12UT1.cpp:490:10: warning: unused variable ‘epTC’ [-Wunused-variable]
  490 |   double epTC = 1;
      |          ^~~~
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o UtilityFrailtyPH12.so PH12UT1.o RcppExports.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpQy2PxB/R.INSTALL2d7e08f4e8ec3/UtilityFrailtyPH12/src'
make[1]: Entering directory '/tmp/RtmpQy2PxB/R.INSTALL2d7e08f4e8ec3/UtilityFrailtyPH12/src'
make[1]: Leaving directory '/tmp/RtmpQy2PxB/R.INSTALL2d7e08f4e8ec3/UtilityFrailtyPH12/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-UtilityFrailtyPH12/00new/UtilityFrailtyPH12/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘UtilityFrailtyPH12’
    finding HTML links ... done
    GetDesire                               html  
    GetOptimalUT                            html  
    GetPriors                               html  
    RunAdaptiveEFFTOX                       html  
    RunAdaptiveUT                           html  
    UTEFFTOX                                html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (UtilityFrailtyPH12)