* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘UCSCXenaShiny’ ...
** this is package ‘UCSCXenaShiny’ version ‘2.2.0’
** package ‘UCSCXenaShiny’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘UCSCXenaShiny’
    finding HTML links ... done
    TCGA.organ                              html  
    UCSCXenaShiny-package                   html  
    analyze_gene_drug_response_asso         html  
    analyze_gene_drug_response_diff         html  
    app_run                                 html  
    app_run2                                html  
    available_hosts                         html  
    calc_pw_mut_cnv                         html  
    ccle_absolute                           html  
    ccle_info                               html  
    ccle_info_fine                          html  
    dot-opt_pancan                          html  
    ezcor                                   html  
    ezcor_batch                             html  
    ezcor_partial_cor                       html  
    get_pancan_value                        html  
    keep_cat_cols                           html  
    load_data                               html  
    mol_quick_analysis                      html  
    pcawg_info                              html  
    pcawg_info_fine                         html  
    pcawg_purity                            html  
    pipe                                    html  
    query_general_value                     html  
    query_molecule_value                    html  
    query_pancan_value                      html  
    query_tcga_group                        html  
    query_toil_value_df                     html  
    tcga_clinical                           html  
    tcga_clinical_fine                      html  
    tcga_genome_instability                 html  
    tcga_gtex                               html  
    tcga_purity                             html  
    tcga_subtypes                           html  
    tcga_surv                               html  
    tcga_surv_analysis                      html  
    tcga_tmb                                html  
    toil_info                               html  
    vis_ccle_gene_cor                       html  
    vis_ccle_tpm                            html  
    vis_dim_dist                            html  
    vis_gene_TIL_cor                        html  
    vis_gene_cor                            html  
    vis_gene_cor_cancer                     html  
    vis_gene_cross_omics                    html  
    vis_gene_drug_response_asso             html  
    vis_gene_drug_response_diff             html  
    vis_gene_immune_cor                     html  
    vis_gene_msi_cor                        html  
    vis_gene_pw_cor                         html  
    vis_gene_stemness_cor                   html  
    vis_gene_tmb_cor                        html  
    vis_identifier_cor                      html  
    vis_identifier_dim_dist                 html  
    vis_identifier_grp_comparison           html  
    vis_identifier_grp_surv                 html  
    vis_identifier_multi_cor                html  
    vis_pancan_anatomy                      html  
    vis_pathway_cross_omics                 html  
    vis_pcawg_dist                          html  
    vis_pcawg_gene_cor                      html  
    vis_pcawg_unicox_tree                   html  
    vis_toil_Mut                            html  
    vis_toil_Mut_cancer                     html  
    vis_toil_TvsN                           html  
    vis_toil_TvsN_cancer                    html  
    vis_unicox_tree                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (UCSCXenaShiny)