* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘TreeDist’ ...
** package ‘TreeDist’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
using C++17
make[1]: Entering directory '/tmp/Rtmpk7GToQ/R.INSTALL35591a5683ce1d/TreeDist/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c day_1985.cpp -o day_1985.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c lap.cpp -o lap.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mast.cpp -o mast.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nni_distance.cpp -o nni_distance.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c tree_distance_functions.cpp -o tree_distance_functions.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c tree_distances.cpp -o tree_distances.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o TreeDist.so RcppExports.o day_1985.o lap.o mast.o nni_distance.o tree_distance_functions.o tree_distances.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpk7GToQ/R.INSTALL35591a5683ce1d/TreeDist/src'
make[1]: Entering directory '/tmp/Rtmpk7GToQ/R.INSTALL35591a5683ce1d/TreeDist/src'
make[1]: Leaving directory '/tmp/Rtmpk7GToQ/R.INSTALL35591a5683ce1d/TreeDist/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-TreeDist/00new/TreeDist/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘TreeDist’
    finding HTML links ... done
    AllSplitPairings                        html  
    CalculateTreeDistance                   html  
    CompareAll                              html  
    Entropy                                 html  
    GeneralizedRF                           html  
    JaccardRobinsonFoulds                   html  
    KMeansPP                                html  
    KendallColijn                           html  
    LAPJV                                   html  
    MASTSize                                html  
    MSTSegments                             html  
    MapTrees                                html  
    MappingQuality                          html  
    MatchingSplitDistance                   html  
    MeilaVariationOfInformation             html  
    NNIDist                                 html  
    NormalizeInfo                           html  
    NyeSimilarity                           html  
    PathDist                                html  
    Plot3                                   html  
    ReportMatching                          html  
    Robinson-Foulds                         html  
    SPRDist                                 html  
    SpectralEigens                          html  
    SplitEntropy                            html  
    SplitSharedInformation                  html  
    SplitsCompatible                        html  
    StartParallel                           html  
    TreeDist-package                        html  
    TreeDistPlot                            html  
    TreeDistance                            html  
    TreeInfo                                html  
    VisualizeMatching                       html  
    cluster-statistics                      html  
    dot-MASTSizeEdges                       html  
    dot-PairMean                            html  
    dot-TreeDistance                        html  
    median.multiPhylo                       html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TreeDist)