- using R version 4.4.1 Patched (2024-07-08 r86915)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (Debian 13.3.0-3) 13.3.0
GNU Fortran (Debian 13.3.0-3) 13.3.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘TOmicsVis/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘TOmicsVis’ version ‘2.0.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘TOmicsVis’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [15s/22s] OK
- checking whether the package can be loaded with stated dependencies ... [15s/20s] OK
- checking whether the package can be unloaded cleanly ... [16s/19s] OK
- checking whether the namespace can be loaded with stated dependencies ... [15s/19s] OK
- checking whether the namespace can be unloaded cleanly ... [15s/20s] OK
- checking loading without being on the library search path ... [15s/21s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [76s/94s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [1s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [143s/175s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
chord_plot 14.848 1.457 19.051
circos_heatmap 8.634 0.845 12.546
survival_plot 8.836 0.566 11.523
heatmap_cluster 6.096 0.378 7.638
go_enrich_stat 5.616 0.360 7.560
box_plot 5.040 0.590 6.856
umap_plot 5.199 0.360 6.163
kegg_enrich_net 5.179 0.190 7.454
violin_plot 4.833 0.311 5.962
tsne_plot 4.384 0.281 5.807
dendro_plot 3.434 0.344 5.217
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [133s/175s] OK
- checking PDF version of manual ... [8s/11s] OK
- checking HTML version of manual ... [3s/5s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: OK