* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘T4cluster’ ...
** package ‘T4cluster’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
using C++11
make[1]: Entering directory '/tmp/RtmppAA3yA/R.INSTALL19944b66fd05c/T4cluster/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c src_SOC.cpp -o src_SOC.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c src_coresets.cpp -o src_coresets.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c src_functional.cpp -o src_functional.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c src_gauss.cpp -o src_gauss.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c src_gmm.cpp -o src_gmm.o
src_gmm.cpp: In function ‘Rcpp::List gmm_11R(arma::mat&, int, double, int, bool)’:
src_gmm.cpp:399:7: warning: variable ‘oldPar’ set but not used [-Wunused-but-set-variable]
399 | int oldPar = 0;
| ^~~~~~
src_gmm.cpp: In function ‘double gmm_16Gfix_loglkd(arma::mat, arma::vec, arma::mat, arma::cube, arma::vec)’:
src_gmm.cpp:551:7: warning: unused variable ‘p’ [-Wunused-variable]
551 | int p = X.n_cols;
| ^
src_gmm.cpp: In function ‘arma::vec gmm_density(arma::mat&, arma::vec&, arma::mat&, arma::cube&)’:
src_gmm.cpp:698:7: warning: unused variable ‘p’ [-Wunused-variable]
698 | int p = coords.n_cols;
| ^
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c src_kmeans.cpp -o src_kmeans.o
src_kmeans.cpp: In function ‘Rcpp::List arma_kmeans_kmeanspp(arma::mat&, arma::mat&, int, int)’:
src_kmeans.cpp:26:7: warning: unused variable ‘N’ [-Wunused-variable]
26 | int N = X.n_cols;
| ^
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c src_spectral.cpp -o src_spectral.o
src_spectral.cpp: In function ‘Rcpp::List cpp_scNJW(arma::mat&, int, double, bool, int)’:
src_spectral.cpp:61:7: warning: unused variable ‘N’ [-Wunused-variable]
61 | int N = D.n_rows;
| ^
src_spectral.cpp: In function ‘Rcpp::List cpp_scSM(arma::mat&, int, double, bool, int)’:
src_spectral.cpp:75:7: warning: unused variable ‘N’ [-Wunused-variable]
75 | int N = D.n_rows;
| ^
src_spectral.cpp: In function ‘Rcpp::List cpp_scUL(arma::mat&, int, double, bool, int)’:
src_spectral.cpp:89:7: warning: unused variable ‘N’ [-Wunused-variable]
89 | int N = D.n_rows;
| ^
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c src_sphere.cpp -o src_sphere.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c src_subspace.cpp -o src_subspace.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c utilities.cpp -o utilities.o
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o T4cluster.so RcppExports.o src_SOC.o src_coresets.o src_functional.o src_gauss.o src_gmm.o src_kmeans.o src_spectral.o src_sphere.o src_subspace.o utilities.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmppAA3yA/R.INSTALL19944b66fd05c/T4cluster/src'
make[1]: Entering directory '/tmp/RtmppAA3yA/R.INSTALL19944b66fd05c/T4cluster/src'
make[1]: Leaving directory '/tmp/RtmppAA3yA/R.INSTALL19944b66fd05c/T4cluster/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-T4cluster/00new/T4cluster/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘T4cluster’
finding HTML links ... done
EKSS html
LRR html
LRSC html
LSR html
MSM html
SSC html
SSQP html
compare.adjrand html
compare.rand html
dpmeans html
funhclust html
funkmeans03A html
gen3S html
genDONUTS html
genLP html
genSMILEY html
gmm html
gmm03F html
gmm11R html
gmm16G html
gskmeans html
household html
kmeans html
kmeans18B html
kmeanspp html
pcm html
predict.MSM html
psm html
sc05Z html
sc09G html
sc10Z html
sc11Y html
sc12L html
scNJW html
scSM html
scUL html
spkmeans html
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (T4cluster)