* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Surrogate’ ...
** this is package ‘Surrogate’ version ‘3.4.1’
** package ‘Surrogate’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘Surrogate’
finding HTML links ... done
AA.MultS html
ARMD.MultS html
ARMD html
BifixedContCont html
BimixedCbCContCont html
BimixedContCont html
Bootstrap.MEP.BinBin html
CausalDiagramBinBin html
CausalDiagramContCont html
Dvine_ICA_confint html
ECT html
Fano.BinBin html
FederatedApproachStage1 html
FederatedApproachStage2 html
FixedBinBinIT html
FixedBinContIT html
FixedContBinIT html
FixedContContIT html
FixedDiscrDiscrIT html
ICA.BinBin.Grid.Full html
ICA.BinBin.Grid.Sample html
ICA.BinBin.Grid.Sample.Uncert html
ICA.BinCont.BS html
ICA.ContCont.MultS.MPC html
ICA.ContCont.MultS.PC html
ICA.ContCont.MultS html
ICA.ContCont.Mult_alt html
ICA.Sample.ContCont html
ICA.Sample.ControlTreat html
ICABinBin html
ICABinBinCounterAssum html
ICABinCont html
ICAContCont html
ICA_alpha_ContCont html
ICA_given_model_constructor html
ICA_given_model_constructor_SurvSurv html
ICA_t html
ISTE.ContCont html
LongToWide html
MICA.Sample.ContCont html
MICAContCont html
MarginalProbs html
MaxEntICABinBin html
MaxEntICAContCont html
MaxEntSPFBinBin html
MetaAnalyticSurvBin html
MetaAnalyticSurvCat html
MetaAnalyticSurvCont html
MetaAnalyticSurvSurv html
MinSurrContCont html
MixedContContIT html
MufixedContCont.MultS html
MumixedContCont.MultS html
Ovarian html
PANSS html
PPE.BinBin html
PROC.BinBin html
Plot.FixedDiscrDiscrIT html
Plot.PredTrialTContCont html
Pos.Def.Matrices html
Pred.TrialT.ContCont html
Prentice html
RandVec html
Restrictions.BinBin html
SPF.BinCont html
SPP.BinBin html
Schizo html
Schizo_Bin html
Schizo_BinCont html
Schizo_PANSS html
Sim.Data.Counterfactuals html
Sim.Data.CounterfactualsBinBin html
Sim.Data.MTS html
Sim.Data.STS html
Sim.Data.STSBinBin html
Single.Trial.RE.AA html
Surrogate-package html
SurvSurv html
Test.Mono html
TrialLevelIT html
TrialLevelMA html
TwoStageSurvSurv html
UnifixedContCont html
UnimixedContCont html
association_gof_copula html
binary_continuous_loglik html
cdf_fun html
clayton_loglik_copula_scale html
colorectal html
colorectal4 html
comb27.BinBin html
compute_ICA html
compute_ICA_BinCont html
compute_ICA_ContCont html
compute_ICA_OrdCont html
compute_ICA_OrdOrd html
compute_ICA_SurvSurv html
constructor_ICA_estimator html
continuous_continuous_loglik html
delta_method_log_mutinfo html
estimate_ICA_BinCont html
estimate_ICA_ContCont html
estimate_ICA_OrdCont html
estimate_ICA_OrdOrd html
estimate_marginal html
estimate_mutual_information_SurvSurv html
fit_copula_ContCont html
fit_copula_OrdCont html
fit_copula_OrdOrd html
fit_copula_model_BinCont html
fit_copula_submodel_BinCont html
fit_copula_submodel_ContCont html
fit_copula_submodel_OrdCont html
fit_copula_submodel_OrdOrd html
fit_model_SurvSurv html
frank_loglik_copula_scale html
gaussian_loglik_copula_scale html
gumbel_loglik_copula_scale html
log_likelihood_copula_model html
loglik_copula_scale html
marginal_distribution html
marginal_gof_copula html
marginal_gof_plots_scr html
marginal_gof_scr_S_plot html
mean_S_before_T_plot_scr html
model_fit_measures html
new_vine_copula_fit html
new_vine_copula_ss_fit html
ordinal_continuous_loglik html
ordinal_ordinal_loglik html
ordinal_to_cutpoints html
pdf_fun html
plot.CausalInference html
plot.Fano.BinBin html
plot.ICA.BinCont html
plot.ICA.ContCont.Mult html
plot.ICABinBin html
plot.ISTE.ContCont html
plot.InformationTheoretic html
plot.InformationTheoreticBinCombn html
plot.InformationTheoreticSurvSurv html
plot.MaxEntContCont html
plot.MaxEntICABinBin html
plot.MaxEntSPFBinBin html
plot.MetaAnalytic html
plot.MetaAnalyticSurvBin html
plot.MetaAnalyticSurvCat html
plot.MetaAnalyticSurvCont html
plot.MetaAnalyticSurvSurv html
plot.MinSurrContCont html
plot.PPE.BinBin html
plot.SPF.BinCont html
plot.SPPBinBin html
plot.TrialLevelIT html
plot.TrialLevelMA html
plot.TwoStageSurvSurv html
plot.comb27.BinBin html
plot.vine_copula_fit html
print.MetaAnalyticSurvBin html
print.MetaAnalyticSurvCat html
print.MetaAnalyticSurvCont html
print.MetaAnalyticSurvSurv html
print.vine_copula_fit html
prostate html
sample_copula_parameters html
sample_deltas_BinCont html
sample_dvine html
sensitivity_analysis_BinCont_copula html
sensitivity_analysis_SurvSurv_copula html
sensitivity_analysis_copula html
sensitivity_intervals_Dvine html
summary.FederatedApproachStage2 html
summary.MetaAnalyticSurvBin html
summary.MetaAnalyticSurvCat html
summary.MetaAnalyticSurvCont html
summary.MetaAnalyticSurvSurv html
summary.gen html
summary_level_bootstrap_ICA html
twostep_BinCont html
twostep_SurvSurv html
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Surrogate)