* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘Surrogate’ ... ** package ‘Surrogate’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘Surrogate’ finding HTML links ... done AA.MultS html ARMD.MultS html ARMD html BifixedContCont html BimixedCbCContCont html BimixedContCont html Bootstrap.MEP.BinBin html CausalDiagramBinBin html CausalDiagramContCont html Dvine_ICA_confint html ECT html Fano.BinBin html FixedBinBinIT html FixedBinContIT html FixedContBinIT html FixedContContIT html FixedDiscrDiscrIT html finding level-2 HTML links ... done ICA.BinBin.Grid.Full html ICA.BinBin.Grid.Sample html ICA.BinBin.Grid.Sample.Uncert html ICA.BinCont.BS html ICA.ContCont.MultS.MPC html ICA.ContCont.MultS.PC html ICA.ContCont.MultS html ICA.ContCont.Mult_alt html ICA.Sample.ContCont html ICABinBin html ICABinBinCounterAssum html ICABinCont html ICAContCont html ICA_given_model_constructor html ISTE.ContCont html LongToWide html MICA.Sample.ContCont html MICAContCont html MarginalProbs html MaxEntICABinBin html MaxEntICAContCont html MaxEntSPFBinBin html MinSurrContCont html MixedContContIT html MufixedContCont.MultS html MumixedContCont.MultS html Ovarian html PANSS html PPE.BinBin html PROC.BinBin html Plot.FixedDiscrDiscrIT html Plot.PredTrialTContCont html Pos.Def.Matrices html Pred.TrialT.ContCont html Prentice html RandVec html Restrictions.BinBin html SPP.BinBin html SPP.BinCont html Schizo html Schizo_Bin html Schizo_BinCont html Schizo_PANSS html Sim.Data.Counterfactuals html Sim.Data.CounterfactualsBinBin html Sim.Data.MTS html Sim.Data.STS html Sim.Data.STSBinBin html Single.Trial.RE.AA html SurvSurv html Test.Mono html TrialLevelIT html TrialLevelMA html TwoStageSurvSurv html UnifixedContCont html UnimixedContCont html binary_continuous_loglik html cdf_fun html clayton_loglik_copula_scale html colorectal html colorectal4 html comb27.BinBin html compute_ICA_BinCont html compute_ICA_SurvSurv html delta_method_log_mutinfo html estimate_ICA_BinCont html estimate_mutual_information_SurvSurv html fit_copula_model_BinCont html fit_copula_submodel_BinCont html fit_model_SurvSurv html frank_loglik_copula_scale html gaussian_loglik_copula_scale html gumbel_loglik_copula_scale html log_likelihood_copula_model html loglik_copula_scale html marginal_distribution html marginal_gof_plots_scr html marginal_gof_scr_S_plot html mean_S_before_T_plot_scr html model_fit_measures html new_vine_copula_ss_fit html pdf_fun html plot.CausalInference html plot.Fano.BinBin html plot.ICA.ContCont.Mult html plot.ICABinBin html plot.ICABinCont html plot.ISTE.ContCont html plot.InformationTheoretic html plot.InformationTheoreticBinCombn html plot.InformationTheoreticSurvSurv html plot.MaxEntContCont html plot.MaxEntICABinBin html plot.MaxEntSPFBinBin html plot.MetaAnalytic html plot.MinSurrContCont html plot.PPE.BinBin html plot.SPPBinBin html plot.SPPBinCont html plot.TrialLevelIT html plot.TrialLevelMA html plot.TwoStageSurvSurv html plot.comb27.BinBin html plot.survbin html plot.survcat html print.survbin html print.survcat html sample_copula_parameters html sample_deltas_BinCont html sample_dvine html sensitivity_analysis_BinCont_copula html sensitivity_analysis_SurvSurv_copula html sensitivity_intervals_Dvine html summary.gen html summary.survbin html summary.survcat html summary_level_bootstrap_ICA html survbin html survcat html twostep_BinCont html twostep_SurvSurv html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Surrogate)