* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SummaryLasso’ ...
** package ‘SummaryLasso’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/Rtmpe2rIa1/R.INSTALL264de48ecf832/SummaryLasso/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c gsPEN.c -o gsPEN.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c gsfPEN.c -o gsfPEN.o
gsfPEN.c: In function ‘gsfFuncC’:
gsfPEN.c:87:63: warning: variable ‘stuning’ set but not used [-Wunused-but-set-variable]
   87 |     int **skipb, niter, tuningIndex = -1, i, j,j1, j2, found, stuning = 0, cindex;
      |                                                               ^~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c utility.c -o utility.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SummaryLasso.so gsPEN.o gsfPEN.o utility.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpe2rIa1/R.INSTALL264de48ecf832/SummaryLasso/src'
make[1]: Entering directory '/tmp/Rtmpe2rIa1/R.INSTALL264de48ecf832/SummaryLasso/src'
make[1]: Leaving directory '/tmp/Rtmpe2rIa1/R.INSTALL264de48ecf832/SummaryLasso/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SummaryLasso/00new/SummaryLasso/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘SummaryLasso’
    finding HTML links ... done
    Nvec                                    html  
    funcIndex                               html  
    gsPEN                                   html  
    gsfPEN                                  html  
    plinkLD                                 html  
    summaryZ                                html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SummaryLasso)