* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘StrainRanking’ ...
** this is package ‘StrainRanking’ version ‘1.2’
** package ‘StrainRanking’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp80zllu/R.INSTALL1c3e85ed3a95f/StrainRanking/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c StrainRanking_init.c -o StrainRanking_init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c functions1.c -o functions1.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o StrainRanking.so StrainRanking_init.o functions1.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp80zllu/R.INSTALL1c3e85ed3a95f/StrainRanking/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp80zllu/R.INSTALL1c3e85ed3a95f/StrainRanking/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp80zllu/R.INSTALL1c3e85ed3a95f/StrainRanking/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-StrainRanking/00new/StrainRanking/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘StrainRanking’
    finding HTML links ... done
    DGobj-class                             html  
    DGobj.rawdata                           html  
    DGobj.simul.mechanistic                 html  
    DGobj.simul.regression                  html  
    PathogenCompositionMoryzaeChina         html  
    PathogenCompositionMoryzaeMadagascar    html  
    PathogenCompositionPsyringaeClades      html  
    PathogenCompositionPsyringaeHaplotypes
                                            html  
    PathogenCompositionPsyringaePhylogroups
                                            html  
    PathogenCompositionPtriticinaGalibier   html  
    PathogenCompositionPtriticinaKalango    html  
    StrainRanking-package                   html  
    generation.alpha.3strains               html  
    gmcpic.test                             html  
    powderymildew                           html  
    ranking.strains                         html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (StrainRanking)