* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Spec2Annot’ ...
** this is package ‘Spec2Annot’ version ‘1.3.5’
** package ‘Spec2Annot’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-16 (Debian 16.2.0-3) 16.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpntTjja/R.INSTALL3f3993447e7be/Spec2Annot/src'
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c brute_force_const.cpp -o brute_force_const.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp_annotate_spectra.cpp -o cpp_annotate_spectra.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c find_combn.cpp -o find_combn.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c function.cpp -o function.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c match_table.cpp -o match_table.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mz_ppm.cpp -o mz_ppm.o
g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o Spec2Annot.so RcppExports.o brute_force_const.o cpp_annotate_spectra.o find_combn.o function.o match_table.o mz_ppm.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpntTjja/R.INSTALL3f3993447e7be/Spec2Annot/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpntTjja/R.INSTALL3f3993447e7be/Spec2Annot/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpntTjja/R.INSTALL3f3993447e7be/Spec2Annot/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Spec2Annot/00new/Spec2Annot/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘Spec2Annot’
    finding HTML links ... done
    Adduct_db                               html  
    CJ1                                     html  
    Element                                 html  
    Isotopes_db                             html  
    Losses_db                               html  
    Spec2Annot-package                      html  
    add_formula_to_annot                    html  
    annot_to_html                           html  
    annotate_mz                             html  
    annotate_spectra                        html  
    brute_force_const                       html  
    db_monocharge                           html  
    electron_mass                           html  
    element_from_formula                    html  
    find_compo_from_mass                    html  
    fun_generate_ions_from_mz               html  
    fun_get_ion_list                        html  
    gen_adduct                              html  
    gen_formula_from_compo                  html  
    gen_ionlist                             html  
    gen_isotopes                            html  
    gen_losses                              html  
    gen_monocharge                          html  
    get_charge_from_compo                   html  
    get_dbe                                 html  
    get_element_from_mass                   html  
    get_iso_from_annot                      html  
    get_nrule                               html  
    get_range                               html  
    get_senior                              html  
    ions_database                           html  
    match_tables                            html  
    mz_calc_ion                             html  
    mz_from_string                          html  
    mz_ppm                                  html  
    mz_range                                html  
    mz_vec_aggregate                        html  
    pipe                                    html  
    search_db                               html  
    search_db_cpp                           html  
    spectra_full                            html  
    spectra_ms2                             html  
    string_from_element                     html  
    valence_db                              html  
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Spec2Annot)