* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SpatialExtremes’ ...
** package ‘SpatialExtremes’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp4Sxba3/R.INSTALL2b4e793c9ffda1/SpatialExtremes/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c brownResnick.c -o brownResnick.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c circulant.c -o circulant.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c concurrence.c -o concurrence.o
concurrence.c: In function ‘concProbKendall’:
concurrence.c:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
66 | #pragma omp parallel for
|
concurrence.c:97: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
97 | #pragma omp parallel for
|
concurrence.c: In function ‘empiricalBootConcProb’:
concurrence.c:161: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
161 | #pragma omp parallel for
|
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c condsimMaxStab.c -o condsimMaxStab.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c copula.c -o copula.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c covariance.c -o covariance.o
covariance.c: In function ‘whittleMatern’:
covariance.c:31: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
31 | #pragma omp parallel for
|
covariance.c: In function ‘cauchy’:
covariance.c:70: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
70 | #pragma omp parallel for
|
covariance.c: In function ‘caugen’:
covariance.c:111: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
111 | #pragma omp parallel for
|
covariance.c: In function ‘powerExp’:
covariance.c:146: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
146 | #pragma omp parallel for
|
covariance.c: In function ‘bessel’:
covariance.c:183: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
183 | #pragma omp parallel for
|
covariance.c: In function ‘mahalDistFct’:
covariance.c:226: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
226 | #pragma omp parallel for
|
covariance.c: In function ‘mahalDistFct3d’:
covariance.c:260: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
260 | #pragma omp parallel for
|
covariance.c: In function ‘geomCovariance’:
covariance.c:314: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
314 | #pragma omp parallel for
|
covariance.c: In function ‘brownResnick’:
covariance.c:329: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
329 | #pragma omp parallel for
|
covariance.c: In function ‘fbm’:
covariance.c:364: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
364 | #pragma omp parallel for
|
covariance.c:368: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
368 | #pragma omp parallel for
|
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c debugUtils.c -o debugUtils.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c direct.c -o direct.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c extcoeff.c -o extcoeff.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c extremalt.c -o extremalt.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fft.c -o fft.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fitcovmat.c -o fitcovmat.o
fitcovmat.c: In function ‘fitcovmat2d’:
fitcovmat.c:23: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
23 | #pragma omp parallel for reduction(+:dummy)
|
fitcovmat.c: In function ‘fitcovmat3d’:
fitcovmat.c:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
50 | #pragma omp parallel for reduction(+:dummy)
|
fitcovmat.c: In function ‘fitcovariance’:
fitcovmat.c:97: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
97 | #pragma omp parallel for reduction(+:dummy)
|
fitcovmat.c: In function ‘fittcovariance’:
fitcovmat.c:149: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
149 | #pragma omp parallel for reduction(+:dummy)
|
fitcovmat.c: In function ‘fiticovariance’:
fitcovmat.c:207: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
207 | #pragma omp parallel for reduction(+:dummy)
|
fitcovmat.c: In function ‘fitgcovariance’:
fitcovmat.c:241: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
241 | #pragma omp parallel for reduction(+:dummy)
|
fitcovmat.c: In function ‘fitbrcovariance’:
fitcovmat.c:268: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
268 | #pragma omp parallel for reduction(+:dummy)
|
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fondeville.c -o fondeville.o
In file included from fondeville.c:31:
lattice_data.h: In function ‘pointEstimate’:
lattice_data.h:2:13: warning: unused variable ‘primeNumbers’ [-Wunused-variable]
2 | const int primeNumbers[1000] = {
| ^~~~~~~~~~~~
fondeville.c: In function ‘pmvnorm2’:
fondeville.c:229: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
229 | #pragma omp parallel for reduction(+:est)
|
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c geomgauss.c -o geomgauss.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kriging.c -o kriging.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c latentVariable.c -o latentVariable.o
latentVariable.c: In function ‘DIC’:
latentVariable.c:673: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
673 | #pragma omp parallel for reduction(+:tmp)
|
latentVariable.c:686: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
686 | #pragma omp parallel for reduction(+:tmp)
|
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c madogram.c -o madogram.o
madogram.c: In function ‘madogram’:
madogram.c:7: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
7 | #pragma omp parallel for
|
madogram.c: In function ‘variogram’:
madogram.c:30: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
30 | #pragma omp parallel for
|
madogram.c: In function ‘lmadogram’:
madogram.c:56: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
56 | #pragma omp parallel for
|
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c maxLinear.c -o maxLinear.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c maxStableExactSimulation.c -o maxStableExactSimulation.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mcmc.c -o mcmc.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c newCode.c -o newCode.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pairwiselik.c -o pairwiselik.o
pairwiselik.c: In function ‘lplikschlather’:
pairwiselik.c:11: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
11 | #pragma omp parallel for reduction(+:dns)
|
pairwiselik.c: In function ‘lpliksmith’:
pairwiselik.c:83: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
83 | #pragma omp parallel for reduction(+:dns)
|
pairwiselik.c: In function ‘lplikschlatherind’:
pairwiselik.c:169: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
169 | #pragma omp parallel for reduction(+:dns)
|
pairwiselik.c:187: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
187 | #pragma omp parallel for reduction(+:dns)
|
pairwiselik.c: In function ‘lplikextremalt’:
pairwiselik.c:262: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
262 | #pragma omp parallel for reduction(+:dns)
|
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c penalizations.c -o penalizations.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c randomlines.c -o randomlines.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c schlather.c -o schlather.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c schlatherind.c -o schlatherind.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simBrownResnick.c -o simBrownResnick.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simextremalt.c -o simextremalt.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simgeometric.c -o simgeometric.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simschlather.c -o simschlather.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simsmith.c -o simsmith.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c smith.c -o smith.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c smith3d.c -o smith3d.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spatgevlik.c -o spatgevlik.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c standardErrors.c -o standardErrors.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c standardErrorsCommonPart.c -o standardErrorsCommonPart.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c turningbands.c -o turningbands.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c univllik.c -o univllik.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o
utils.c: In function ‘distance’:
utils.c:11: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
11 | #pragma omp parallel for
|
utils.c:22: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
22 | #pragma omp parallel for
|
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weightedPairwiselik.c -o weightedPairwiselik.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SpatialExtremes.so brownResnick.o circulant.o concurrence.o condsimMaxStab.o copula.o covariance.o debugUtils.o direct.o extcoeff.o extremalt.o fft.o fitcovmat.o fondeville.o geomgauss.o init.o kriging.o latentVariable.o madogram.o maxLinear.o maxStableExactSimulation.o mcmc.o newCode.o pairwiselik.o penalizations.o randomlines.o schlather.o schlatherind.o simBrownResnick.o simextremalt.o simgeometric.o simschlather.o simsmith.o smith.o smith3d.o spatgevlik.o standardErrors.o standardErrorsCommonPart.o turningbands.o univllik.o utils.o weightedPairwiselik.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp4Sxba3/R.INSTALL2b4e793c9ffda1/SpatialExtremes/src'
make[1]: Entering directory '/tmp/Rtmp4Sxba3/R.INSTALL2b4e793c9ffda1/SpatialExtremes/src'
make[1]: Leaving directory '/tmp/Rtmp4Sxba3/R.INSTALL2b4e793c9ffda1/SpatialExtremes/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SpatialExtremes/00new/SpatialExtremes/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘SpatialExtremes’
finding HTML links ... done
DIC html
GEV html
GPD html
SpatialExtremes-package html
TIC html
USHCNTemp html
anova html
concprob html
concurrencemap html
condmap html
condrgp html
condrmaxlin html
condrmaxstab html
covariance html
cv html
distances html
extcoeff html
extcoeffemp html
fitcopula html
fitcovariance html
fitcovmat html
fitmaxstab html
fitspatgev html
fmadogram html
gcv html
gev2frech html
internals html
kriging html
latentVariable html
lmadogram html
logLik html
lsmaxstab html
madogram html
map html
map.latent html
modeldef html
plot.copula html
plot.maxstab html
predict html
print html
profile.maxstab html
profile2d.maxstab html
qqextcoeff html
qqgev html
rainfall html
rb html
rbpspline html
rcopula html
rgp html
rmaxlin html
simmaxstab html
swiss html
swissalt html
symbolplot html
univfit html
variogram html
vdc html
windgust html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SpatialExtremes)