* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SpatialEpi’ ...
** this is package ‘SpatialEpi’ version ‘1.2.8’
** package ‘SpatialEpi’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpixhsLe/R.INSTALL2f486963f19c41/SpatialEpi/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bayes_cluster.cpp -o bayes_cluster.o
bayes_cluster.cpp: In function ‘Rcpp::List return_local_moves(Rcpp::NumericVector, Rcpp::List, Rcpp::NumericMatrix)’:
bayes_cluster.cpp:399:23: warning: ‘end’ may be used uninitialized [-Wmaybe-uninitialized]
  399 |     for(int z=start; z<end; z++){
      |                      ~^~~~
bayes_cluster.cpp:359:69: note: ‘end’ was declared here
  359 |   int k = theta.size(), n_zones = cluster_list.size(), zone, start, end, zone_sub,
      |                                                                     ^~~
bayes_cluster.cpp:399:23: warning: ‘start’ may be used uninitialized [-Wmaybe-uninitialized]
  399 |     for(int z=start; z<end; z++){
      |                      ~^~~~
bayes_cluster.cpp:359:62: note: ‘start’ was declared here
  359 |   int k = theta.size(), n_zones = cluster_list.size(), zone, start, end, zone_sub,
      |                                                              ^~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cluster_detection.cpp -o cluster_detection.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SpatialEpi.so RcppExports.o bayes_cluster.o cluster_detection.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpixhsLe/R.INSTALL2f486963f19c41/SpatialEpi/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpixhsLe/R.INSTALL2f486963f19c41/SpatialEpi/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpixhsLe/R.INSTALL2f486963f19c41/SpatialEpi/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SpatialEpi/00new/SpatialEpi/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘SpatialEpi’
    finding HTML links ... done
    EBpostdens                              html  
    EBpostthresh                            html  
    GammaPriorCh                            html  
    LogNormalPriorCh                        html  
    NYleukemia                              html  
    NYleukemia_sf                           html  
    bayes_cluster                           html  
    besag_newell                            html  
    circle                                  html  
    create_geo_objects                      html  
    eBayes                                  html  
    estimate_lambda                         html  
    expected                                html  
    grid2latlong                            html  
    kulldorff                               html  
    latlong2grid                            html  
    leglabs                                 html  
    mapvariable                             html  
    pennLC                                  html  
    pennLC_sf                               html  
    plotmap                                 html  
    polygon2spatial_polygon                 html  
    process_MCMC_sample                     html  
    scotland                                html  
    scotland_sf                             html  
    zones                                   html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SpatialEpi)