* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SpatPCA’ ...
** this is package ‘SpatPCA’ version ‘1.3.5’
** package ‘SpatPCA’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-5) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSj79au/R.INSTALL1b1a0e12b5740e/SpatPCA/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
                 from RcppExports.cpp:4:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’
   71 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
      |                                                                                                                                                         ^
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppSpatPCA.cpp -o RcppSpatPCA.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
                 from RcppSpatPCA.cpp:5:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’
   71 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
      |                                                                                                                                                         ^
RcppSpatPCA.cpp: In member function ‘virtual void thinPlateSpline::operator()(std::size_t, std::size_t)’:
RcppSpatPCA.cpp:25:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   25 |         if(j > i) {
      |            ~~^~~
RcppSpatPCA.cpp: In member function ‘virtual void spatpcaCVPhi3::operator()(std::size_t, std::size_t)’:
RcppSpatPCA.cpp:501:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  501 |       for(int gj = 0; gj < gamma.n_elem; gj++) {
      |                       ~~~^~~~~~~~~~~~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SpatPCA.so RcppExports.o RcppSpatPCA.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSj79au/R.INSTALL1b1a0e12b5740e/SpatPCA/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSj79au/R.INSTALL1b1a0e12b5740e/SpatPCA/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSj79au/R.INSTALL1b1a0e12b5740e/SpatPCA/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SpatPCA/00new/SpatPCA/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘SpatPCA’
    finding HTML links ... done
    SpatPCA-package                         html  
    checkInputData                          html  
    checkNewLocationsForSpatpcaObject       html  
    detrend                                 html  
    eigenFunction                           html  
    fetchUpperBoundNumberEigenfunctions     html  
    plot.spatpca                            html  
    predict                                 html  
    predictEigenfunction                    html  
    scaleLocation                           html  
    setCores                                html  
    setGamma                                html  
    setL2                                   html  
    setNumberEigenfunctions                 html  
    setTau1                                 html  
    setTau2                                 html  
    spatialPrediction                       html  
    spatpca                                 html  
    spatpcaCV                               html  
    spatpcaCVWithSelectedK                  html  
    thinPlateSplineMatrix                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SpatPCA)