* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SpaDES.core’ ...
** package ‘SpaDES.core’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘citation’ in package ‘SpaDES.core’
** help
*** installing help indices
  converting help for package ‘SpaDES.core’
    finding HTML links ... done
    Copy                                    html  
    Plot                                    html  
    Plots                                   html  
    SpaDES.core-package                     html  
    finding level-2 HTML links ... done

    addChangedAttr                          html  
    addDepends                              html  
    addTagsToOutput                         html  
    all.equal.simList                       html  
    anyPlotting                             html  
    append_attr                             html  
    bindrows                                html  
    cacheMessage                            html  
    checkCacheRepo                          html  
    checkModule                             html  
    checkModuleLocal                        html  
    checkObject                             html  
    checkParams                             html  
    checkpoint                              html  
    checksums                               html  
    citation                                html  
    classFilter                             html  
    clearCache                              html  
    convertToPackage                        html  
    copyModule                              html  
    coreModules                             html  
    createsOutput                           html  
    dealWithClass                           html  
    defineEvent                             html  
    defineModule                            html  
    defineParameter                         html  
    deprecated                              html  
    depsEdgeList                            html  
    depsGraph                               html  
    depsLoadOrder                           html  
    depsPruneEdges                          html  
    doEvent                                 html  
    dot-cleanPkgs                           html  
    dot-findObjects                         html  
    dot-guessPkgFun                         html  
    downloadData                            html  
    downloadModule                          html  
    emptyEventList                          html  
    emptyMetadata                           html  
    eventDiagram                            html  
    expectsInput                            html  
    extractURL                              html  
    fileEdit                                html  
    fileName                                html  
    fileTable                               html  
    fillInputRows                           html  
    fillOutputRows                          html  
    findElements                            html  
    findModuleName                          html  
    findSimList                             html  
    ganttStatus                             html  
    getModuleInputObjects                   html  
    getModuleVersion                        html  
    getOption                               html  
    getSampleFiles                          html  
    globals                                 html  
    identifyChildModules                    html  
    initialize-method                       html  
    inputObjectsDF                          html  
    isNamespaced                            html  
    keepAttrs                               html  
    loadFiles                               html  
    loadSimList                             html  
    makeMemoisable                          html  
    maxTimeunit                             html  
    memoryUse                               html  
    minTimeunit                             html  
    modifySearchPath                        html  
    moduleCodeFiles                         html  
    moduleCoverage                          html  
    moduleDefaults                          html  
    moduleDeps-class                        html  
    moduleDiagram                           html  
    moduleGraph                             html  
    moduleMetadata                          html  
    moduleParamsInputsOuputs                html  
    moduleVersion                           html  
    namespacing                             html  
    newModule                               html  
    newModuleCode                           html  
    newModuleDocumentation                  html  
    newModuleTests                          html  
    newProject                              html  
    newProjectCode                          html  
    objSize.simList                         html  
    objectDiagram                           html  
    objectSynonyms                          html  
    objects                                 html  
    openModules                             html  
    packages                                html  
    paramCheckOtherMods                     html  
    params                                  html  
    parseElems                              html  
    parseMessage                            html  
    parseModule                             html  
    pkgEnv                                  html  
    preDigestByClass                        html  
    prepareOutput                           html  
    priority                                html  
    progress                                html  
    progressBar                             html  
    quickCheck                              html  
    rasterCreate                            html  
    rasterToMemory                          html  
    reexports                               html  
    remoteFileSize                          html  
    restartR                                html  
    restartSpades                           html  
    rndstr                                  html  
    robustDigest                            html  
    runCodeChecks                           html  
    runModuleInputsObjects                  html  
    saveFiles                               html  
    saveSimList                             html  
    scheduleConditionalEvent                html  
    scheduleEvent                           html  
    setPaths                                html  
    show-method                             html  
    sim2gantt                               html  
    simDeps-class                           html  
    simFile                                 html  
    simInit                                 html  
    simInitAndSpades                        html  
    simList-accessors-envir                 html  
    simList-accessors-events                html  
    simList-accessors-inputs                html  
    simList-accessors-metadata              html  
    simList-accessors-modules               html  
    simList-accessors-outputs               html  
    simList-accessors-paths                 html  
    simList-accessors-times                 html  
    simList-class                           html  
    spades-classes                          html  
    spades                                  html  
    spadesOptions                           html  
    spadesTime                              html  
    sub-simList-character-ANY-method        html  
    suppliedElsewhere                       html  
    tagsByClass                             html  
    timeConversion                          html  
    tryCatch                                html  
    unparsed                                html  
    updateList                              html  
    use_gha                                 html  
    verb                                    html  
    writeEventInfo                          html  
    writeRNGInfo                            html  
    zipModule                               html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
Warning in utils::tar(filepath, curPkg, compression = "gzip", compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘SpaDES.core/help/downloadModule+2Ccharacter+2Ccharacter+2Ccharacter+2Ccharacter+2Clogical+2Clogical+2CANY+2Clogical-method.html’
Warning in utils::tar(filepath, curPkg, compression = "gzip", compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘SpaDES.core/help/downloadModule+2Ccharacter+2Cmissing+2Cmissing+2Cmissing+2Cmissing+2Cmissing+2CANY+2CANY-method.html’
Warning in utils::tar(filepath, curPkg, compression = "gzip", compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘SpaDES.core/help/newModuleDocumentation+2Ccharacter+2Ccharacter+2Clogical+2Ccharacter+2Ccharacter-method.html’
Warning in utils::tar(filepath, curPkg, compression = "gzip", compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘SpaDES.core/help/simInit+2Clist+2Clist+2Clist+2Clist+2Clist+2Cdata.frame+2Cdata.frame+2Ccharacter-method.html’
Warning in utils::tar(filepath, curPkg, compression = "gzip", compression_level = 9L,  :
  using GNU extension for long pathname
packaged installation of ‘SpaDES.core’ as ‘SpaDES.core_2.0.5_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (SpaDES.core)