* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SpaCCI’ ...
** this is package ‘SpaCCI’ version ‘1.0.4’
** package ‘SpaCCI’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPLXHnv/R.INSTALL7b5cd602f7344/SpaCCI/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c permutation_func.cpp -o permutation_func.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SpaCCI.so RcppExports.o permutation_func.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPLXHnv/R.INSTALL7b5cd602f7344/SpaCCI/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPLXHnv/R.INSTALL7b5cd602f7344/SpaCCI/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPLXHnv/R.INSTALL7b5cd602f7344/SpaCCI/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SpaCCI/00new/SpaCCI/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘SpaCCI’
    finding HTML links ... done
    DB_dataframe                            html  
    Find_regional_IDs                       html  
    GetShuffledCT                           html  
    Global_Permutations                     html  
    LR_database                             html  
    Local_Regional_Permutations             html  
    SpaCCI_global                           html  
    SpaCCI_local                            html  
    SpaCCI_region                           html  
    plot_SpaCCI_chordDiagram                html  
    plot_SpaCCI_heatmap                     html  
    plot_SpaCCI_local                       html  
    plot_SpaCCI_local_Strength              html  
    plot_Strength_Seurat                    html  
    plot_Strength_localized                 html  
    plot_localized                          html  
    plot_localized_Seurat                   html  
    possible_L_R_pairs_Cellinker            html  
    possible_L_R_pairs_ICELLNET             html  
    possible_L_R_pairs_cellchat             html  
    possible_L_R_pairs_cellphoneDB          html  
    possible_L_R_pairs_connectome           html  
    random_region                           html  
    result_global                           html  
    result_local                            html  
    result_local_spatial_coords_df          html  
    result_regional                         html  
    run_SpaCCI                              html  
    scPalette                               html  
    self_identified_LR                      html  
    test_data                               html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SpaCCI)