* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SmoothHazard’ ...
** package ‘SmoothHazard’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpkKru0Y/R.INSTALL30729631d5f7cc/SmoothHazard/src'
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c commun.f90 -o commun.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c optim.f90 -o optim.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c recKappa.f90 -o recKappa.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c bgos.f90 -o bgos.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c cdfnor.f90 -o cdfnor.o
cdfnor.f90:102:20:
102 | implicit none
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
cdfnor.f90:165:65:
165 | IF (.NOT. (abs(((pq)-0.5D0)-0.5D0).GT.(3.0D0*spmpar(1)))) GO TO 140
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c distance.f90 -o distance.o
distance.f90:319:2:
319 | use commun,only:iconf,level
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
distance.f90:327:2:
327 | quantile,P,bound,m,sd
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
distance.f90:400:5:
400 | if (iconf.eq.1) then
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
distance.f90:401:2:
401 | P = level + (1-level)/2
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
distance.f90:402:2:
402 | m = 0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
distance.f90:403:2:
403 | sd = 1
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
distance.f90:404:2:
404 | call cdfnor(2, P, 1-P, quantile, m, sd, s, bound)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
distance.f90:405:11:
405 | call conf(x,j,n,y,pm,zi)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
distance.f90:406:11:
406 | binf = dexp(-gl + quantile*pm)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
distance.f90:407:11:
407 | bsup = dexp(-gl - quantile*pm)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
distance.f90:408:11:
408 | call conf1(x,j,n,y,pm,zi)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
distance.f90:409:11:
409 | lbinf = lam - quantile*pm
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
distance.f90:410:11:
410 | lbsup = lam + quantile*pm
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
distance.f90:411:2:
411 | else
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
distance.f90:412:2:
412 | binf=0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
distance.f90:413:2:
413 | bsup=0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
distance.f90:414:2:
414 | lbinf=0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
distance.f90:415:2:
415 | lbsup=0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
distance.f90:416:2:
416 | end if
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c estimv.f90 -o estimv.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c fonct.f90 -o fonct.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c idmLikelihood.f90 -o idmLikelihood.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c idmPl.f90 -o idmPl.o
idmPl.f90:37:2:
37 | conf_bands,level_conf,CVcrit,mdf,theta01,theta02,theta12,prt,hess_tot)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
idmPl.f90:54:2:
54 | double precision,intent(in)::level_conf
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
idmPl.f90:114:2:
114 | iconf = conf_bands
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
idmPl.f90:115:2:
115 | level = level_conf
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
idmPl.f90:50:70:
50 | double precision::min,max,maxt1,estimv,maxt2,maxt3,mint1,mint2,mint3,ca,cb,dd,res
| 1
Warning: Unused variable ‘mint2’ declared at (1) [-Wunused-variable]
idmPl.f90:50:76:
50 | double precision::min,max,maxt1,estimv,maxt2,maxt3,mint1,mint2,mint3,ca,cb,dd,res
| 1
Warning: Unused variable ‘mint3’ declared at (1) [-Wunused-variable]
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c idmPlLikelihood.f90 -o idmPlLikelihood.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c idmPlLikelihood2.f90 -o idmPlLikelihood2.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c idmPlLikelihood0.f90 -o idmPlLikelihood0.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c runiran.c -o runiran.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c idmWeib.f90 -o idmWeib.o
idmWeib.f90:11:2:
11 | ,level_conf,prt,hess_tot)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
idmWeib.f90:21:2:
21 | double precision,intent(in)::level_conf
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
idmWeib.f90:81:2:
81 | iconf = conf_bands
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
idmWeib.f90:307:2:
307 | if (iconf.eq.1)then
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
idmWeib.f90:308:2:
308 | alpha = 1 - level_conf
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
idmWeib.f90:391:2:
391 | else
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
idmWeib.f90:392:2:
392 | a01_l=0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
idmWeib.f90:393:2:
393 | a01_u=0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
idmWeib.f90:394:2:
394 | a02_l=0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
idmWeib.f90:395:2:
395 | a02_u=0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
idmWeib.f90:396:2:
396 | a12_l=0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
idmWeib.f90:397:2:
397 | a12_u=0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
idmWeib.f90:398:2:
398 | end if
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
idmWeib.f90:45:54:
45 | double precision,dimension(2000,99)::mate_ri01,mate_ri02,mate_ri12
| 1
Warning: Array ‘mate_ri01’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
idmWeib.f90:45:64:
45 | double precision,dimension(2000,99)::mate_ri01,mate_ri02,mate_ri12
| 1
Warning: Array ‘mate_ri02’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
idmWeib.f90:45:74:
45 | double precision,dimension(2000,99)::mate_ri01,mate_ri02,mate_ri12
| 1
Warning: Array ‘mate_ri12’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c qgauss1.f90 -o qgauss1.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c survLikelihood.f90 -o survLikelihood.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c survPl.f90 -o survPl.o
survPl.f90:74:2:
74 | iconf = conf_bands
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
survPl.f90:75:2:
75 | level = level_conf
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
survPl.f90:33:56:
33 | integer::npar,nvat,j,k,ii,i,ic,ier,interval,irep,truncated,maxiter0,nva
| 1
Warning: Unused variable ‘irep’ declared at (1) [-Wunused-variable]
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c survPlLikelihood.f90 -o survPlLikelihood.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c survWeib.f90 -o survWeib.o
survWeib.f90:8:2:
8 | level_conf,prt,hess_tot)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
survWeib.f90:19:2:
19 | double precision,intent(in)::level_conf
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
survWeib.f90:64:2:
64 | iconf = conf_bands
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
survWeib.f90:317:2:
317 | if (iconf.eq.1)then
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
survWeib.f90:318:2:
318 | alpha = 1 - level_conf
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
survWeib.f90:319:2:
319 | icut = nint(alpha/2*2000 + 1)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
survWeib.f90:439:2:
439 | else
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
survWeib.f90:440:2:
440 | S_l=0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
survWeib.f90:441:2:
441 | S_u=0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
survWeib.f90:442:2:
442 | h_l=0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
survWeib.f90:443:2:
443 | h_u=0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
survWeib.f90:444:2:
444 | end if
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
survWeib.f90:40:61:
40 | double precision,dimension(2000,100)::mate_su,mate_ri
| 1
Warning: Array ‘mate_ri’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
survWeib.f90:40:53:
40 | double precision,dimension(2000,100)::mate_su,mate_ri
| 1
Warning: Array ‘mate_su’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c tri.f90 -o tri.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c useSurv.f90 -o useSurv.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SmoothHazard.so commun.o optim.o recKappa.o bgos.o cdfnor.o distance.o estimv.o fonct.o idmLikelihood.o idmPl.o idmPlLikelihood.o idmPlLikelihood2.o idmPlLikelihood0.o idmWeib.o qgauss1.o survLikelihood.o survPl.o survPlLikelihood.o survWeib.o tri.o useSurv.o init.o runiran.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpkKru0Y/R.INSTALL30729631d5f7cc/SmoothHazard/src'
make[1]: Entering directory '/tmp/RtmpkKru0Y/R.INSTALL30729631d5f7cc/SmoothHazard/src'
make[1]: Leaving directory '/tmp/RtmpkKru0Y/R.INSTALL30729631d5f7cc/SmoothHazard/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SmoothHazard/00new/SmoothHazard/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘SmoothHazard’
finding HTML links ... done
Paq1000 html
idm html
idmModel html
intensity html
plot.idm html
finding level-2 HTML links ... done
plot.shr html
predict.idm html
print.idm html
print.shr html
shr html
sim.idmModel html
sim.survIC html
simulateIDM html
summary.idm html
summary.shr html
survIC html
testdata html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SmoothHazard)