* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SeroTrackR’ ...
** this is package ‘SeroTrackR’ version ‘1.1.1’
** package ‘SeroTrackR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘SeroTrackR’
    finding HTML links ... done
    MFItoRAU                                html  
    MFItoRAU_Adj                            html  
    MFItoRAU_LDH                            html  
    MFItoRAU_Pk                             html  
    MFItoRAU_Plasmo                         html  
    SeroTrackR-package                      html  
    classifyResults                         html  
    dot-check_platform                      html  
    dot-clean_bioplex                       html  
    dot-clean_luminex                       html  
    dot-convert_dilution_to_mfi             html  
    dot-convert_mfi_to_dilution             html  
    dot-convert_mfi_to_dilution_no_bounds   html  
    dot-convert_mfi_to_dilution_no_lower_bound
                                            html  
    dot-extract_luminex_sections            html  
    dot-fit_standard_curve                  html  
    dot-magpix_version_config               html  
    dot-merge_mfitorau                      html  
    dot-post_process_bioplex                html  
    dot-post_process_luminex                html  
    dot-process_antigen_loglog              html  
    dot-read_luminex_file                   html  
    dot-relabel_columns                     html  
    dot-setup_mfitorau_inputs               html  
    example_BioPlex_PvLDH_plate1_xlsx       html  
    example_BioPlex_plate1_xlsx             html  
    example_BioPlex_plate2_xlsx             html  
    example_BioPlex_plate3_xlsx             html  
    example_MAGPIX_pk_10std_plate1_csv      html  
    example_MAGPIX_pk_10std_plate2_csv      html  
    example_MAGPIX_pk_5std_plate1_csv       html  
    example_MAGPIX_pk_5std_plate2_csv       html  
    example_MAGPIX_plate1_csv               html  
    example_MAGPIX_plate2_csv               html  
    example_MAGPIX_plate3_csv               html  
    example_platelayout_1_xlsx              html  
    example_platelayout_pk_10std_xlsx       html  
    example_platelayout_pk_5std_xlsx        html  
    getAntigenCounts                        html  
    getCounts                               html  
    getCountsQC                             html  
    getGithubRelease                        html  
    getPlateLayout                          html  
    getRepeats                              html  
    getSampleID                             html  
    makeCard                                html  
    plotBeadCounts                          html  
    plotBlanks                              html  
    plotBoxPlotClassification               html  
    plotCounts                              html  
    plotMFI                                 html  
    plotModel                               html  
    plotModel_Adj                           html  
    plotRAU                                 html  
    plotStds                                html  
    plotStds_PkPfPv                         html  
    plotStds_all                            html  
    processCounts                           html  
    processPkPfPv                           html  
    readPlateLayout                         html  
    readSeroData                            html  
    renderClassificationTable               html  
    renderDetailsList                       html  
    renderQCReport                          html  
    renderReport                            html  
    renderTwoCols                           html  
    runLDHPipeline                          html  
    runPlasmoPipeline                       html  
    runPvSeroPipeline                       html  
    runQC                                   html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SeroTrackR)