* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SeqNet’ ...
** package ‘SeqNet’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpaR6U4w/R.INSTALLeda0f353a941b/SeqNet/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c components_in_adjacency.cpp -o components_in_adjacency.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ecdf.cpp -o ecdf.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c edges_from_adjacency.cpp -o edges_from_adjacency.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c is_adjacency.cpp -o is_adjacency.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c is_symmetric.cpp -o is_symmetric.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ring_lattice.cpp -o ring_lattice.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SeqNet.so RcppExports.o components_in_adjacency.o ecdf.o edges_from_adjacency.o is_adjacency.o is_symmetric.o ring_lattice.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpaR6U4w/R.INSTALLeda0f353a941b/SeqNet/src'
make[1]: Entering directory '/tmp/RtmpaR6U4w/R.INSTALLeda0f353a941b/SeqNet/src'
make[1]: Leaving directory '/tmp/RtmpaR6U4w/R.INSTALLeda0f353a941b/SeqNet/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SeqNet/00new/SeqNet/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘SeqNet’
finding HTML links ... done
add_modules_to_network html
add_random_module_to_network html
all_networks_contain_same_modules html
all_networks_contain_same_nodes html
as_single_module html
check_adjacency_cpp html
components_in_adjacency html
connect_module_structure html
create_cytoscape_file html
create_empty_module html
create_empty_network html
create_module_from_adjacency_matrix html
create_module_from_association_matrix html
create_modules_for_network html
create_network_from_adjacency_matrix html
create_network_from_association_matrix
html
create_network_from_modules html
dzinb html
ecdf_cpp html
edges_from_adjacency_cpp html
est_params_from_reference html
gen_gaussian html
gen_partial_correlations html
gen_rnaseq html
gen_zinb html
get_adjacency_matrix html
get_adjacency_matrix.default html
get_adjacency_matrix.matrix html
get_adjacency_matrix.network html
get_adjacency_matrix.network_module html
get_association_matrix html
get_association_matrix.default html
get_association_matrix.matrix html
get_association_matrix.network html
get_association_matrix.network_module html
get_degree_distribution html
get_edge_weights_from_module html
get_layout_for_modules html
get_network_arguments html
get_network_characteristics html
get_network_modules html
get_node_names html
get_node_names.default html
get_node_names.matrix html
get_node_names.network html
get_node_names.network_module html
get_sigma html
get_sigma.default html
get_sigma.matrix html
get_sigma.network html
get_sigma.network_module html
get_summary_for_node html
heatmap_network html
is_PD html
is_symmetric_cpp html
is_weighted html
is_weighted.default html
is_weighted.matrix html
is_weighted.network html
is_weighted.network_module html
perturb_network html
plot.network html
plot.network_module html
plot.network_plot html
plot_gene_pair html
plot_modules html
finding level-2 HTML links ... done
plot_network html
plot_network_diff html
plot_network_sim html
print.network html
print.network_module html
print.network_plot html
pzinb html
qzinb html
random_module html
random_module_structure html
random_network html
reference html
remove_connections html
remove_connections.default html
remove_connections.matrix html
remove_connections.network html
remove_connections.network_module html
remove_connections_to_node html
remove_connections_to_node.default html
remove_connections_to_node.matrix html
remove_connections_to_node.network html
remove_connections_to_node.network_module
html
remove_weights html
remove_weights.default html
remove_weights.matrix html
remove_weights.network html
remove_weights.network_module html
replace_module_in_network html
rewire_connections html
rewire_connections.default html
rewire_connections.matrix html
rewire_connections.network html
rewire_connections.network_module html
rewire_connections_to_node html
rewire_connections_to_node.default html
rewire_connections_to_node.matrix html
rewire_connections_to_node.network html
rewire_connections_to_node.network_module
html
ring_lattice_cpp html
rzinb html
sample_link_nodes html
sample_module_nodes html
sample_reference_data html
set_module_edges html
set_module_name html
set_module_weights html
set_node_names html
update_module_with_random_weights html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SeqNet)