* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SelfControlledCaseSeries’ ...
** this is package ‘SelfControlledCaseSeries’ version ‘6.0.0’
** package ‘SelfControlledCaseSeries’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpH9RDMM/R.INSTALL31a3f7fd7a34f/SelfControlledCaseSeries/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AndromedaBuilder.cpp -o AndromedaBuilder.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AndromedaTableIterator.cpp -o AndromedaTableIterator.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c IntegrableFunction.cpp -o IntegrableFunction.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NumericIntegration.cpp -o NumericIntegration.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PersonDataIterator.cpp -o PersonDataIterator.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppWrapper.cpp -o RcppWrapper.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SccsConverter.cpp -o SccsConverter.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SccsSimulator.cpp -o SccsSimulator.o
SccsSimulator.cpp: In member function ‘void ohdsi::sccs::SccsSimulator::processPerson(int, int, int)’:
SccsSimulator.cpp:59:8: warning: ‘startDate.Rcpp::Date::m_tm.tm::tm_yday’ may be used uninitialized [-Wmaybe-uninitialized]
59 | Date startDate = casesObservationPeriodStartDate[caseIndex];
| ^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c WeightFunctions.cpp -o WeightFunctions.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SelfControlledCaseSeries.so AndromedaBuilder.o AndromedaTableIterator.o IntegrableFunction.o NumericIntegration.o PersonDataIterator.o RcppExports.o RcppWrapper.o SccsConverter.o SccsSimulator.o WeightFunctions.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpH9RDMM/R.INSTALL31a3f7fd7a34f/SelfControlledCaseSeries/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpH9RDMM/R.INSTALL31a3f7fd7a34f/SelfControlledCaseSeries/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpH9RDMM/R.INSTALL31a3f7fd7a34f/SelfControlledCaseSeries/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SelfControlledCaseSeries/00new/SelfControlledCaseSeries/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘SelfControlledCaseSeries’
finding HTML links ... done
SccsData-class html
SccsIntervalData-class html
SelfControlledCaseSeries-package html
checkEventExposureIndependenceAssumption
html
checkEventObservationIndependenceAssumption
html
checkRareOutcomeAssumption html
checkTimeStabilityAssumption html
computeMdrr html
computePreExposureGainP html
computeTimeStability html
convertJsonToSccsAnalysesSpecifications
html
convertSccsAnalysesSpecificationsToJson
html
convertUntypedListToSccsAnalysesSpecifications
html
createAgeCovariateSettings html
createCalendarTimeCovariateSettings html
createControlIntervalSettings html
createCreateSccsIntervalDataArgs html
createCreateScriIntervalDataArgs html
createCreateStudyPopulationArgs html
createDefaultSccsMultiThreadingSettings
html
createEraCovariateSettings html
createExposure html
createExposuresOutcome html
createFitSccsModelArgs html
createGetDbSccsDataArgs html
createResultsDataModel html
createSccsAnalysesSpecifications html
createSccsAnalysis html
createSccsDiagnosticThresholds html
createSccsIntervalData html
createSccsMultiThreadingSettings html
createSccsSimulationSettings html
createScriIntervalData html
createSeasonalityCovariateSettings html
createSimulationRiskWindow html
createStudyPopulation html
cyclicSplineDesign html
exportToCsv html
fitSccsModel html
getAttritionTable html
getDataMigrator html
getDbSccsData html
getDiagnosticsSummary html
getFileReference html
getModel html
getResultsDataModelSpecifications html
getResultsSummary html
hasAgeEffect html
hasCalendarTimeEffect html
hasSeasonality html
isSccsData html
isSccsIntervalData html
loadExposuresOutcomeList html
loadSccsAnalysisList html
loadSccsData html
loadSccsIntervalData html
migrateDataModel html
plotAgeEffect html
plotAgeSpans html
plotCalendarTimeEffect html
plotCalendarTimeSpans html
plotEventObservationDependence html
plotEventToCalendarTime html
plotExposureCentered html
plotSeasonality html
runSccsAnalyses html
saveExposuresOutcomeList html
saveSccsAnalysisList html
saveSccsData html
saveSccsIntervalData html
simulateSccsData html
uploadResults html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SelfControlledCaseSeries)