* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘SelectionTools’ ... ** this is package ‘SelectionTools’ version ‘26.3’ ** package ‘SelectionTools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzddoaN/R.INSTALL274b9a7cd60d0a/SelectionTools/src' gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c MathLib12.c -o MathLib12.o gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SelectionTools01.c -o SelectionTools01.o gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SelectionTools02.c -o SelectionTools02.o gcc-16 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SelectionTools.so MathLib12.o SelectionTools01.o SelectionTools02.o -lm -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzddoaN/R.INSTALL274b9a7cd60d0a/SelectionTools/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzddoaN/R.INSTALL274b9a7cd60d0a/SelectionTools/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzddoaN/R.INSTALL274b9a7cd60d0a/SelectionTools/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SelectionTools/00new/SelectionTools/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘SelectionTools’ finding HTML links ... done DT_technow html GS_ALLELE_MAX html GS_STVCF_MAX_ALT html Md_technow html Mf_technow html append.population html be.quiet html concat.population html copy.population html cross html data.params html define.effects html define.effects.df html define.genome html define.map html deprecated html dh html divide.population html effect.weight.set.all html effmap.remove html effmap.remove.all html evaluate.all.loci html evaluate.allele html evaluate.allele.freq html evaluate.allele.freq2 html evaluate.allele2 html evaluate.genome html evaluate.genotype html evaluate.genotype2 html evaluate.hap.calc html evaluate.hap.calc.d html evaluate.hap.free html evaluate.hap.init html evaluate.hap.return.genotype html evaluate.hap.return.table html evaluate.haplotype html evaluate.ld html evaluate.locus html evaluate.mdp html evaluate.population html gd.allele.frequencies html gd.allow.zero.frequencies html gd.correct.missing html gd.data.parameters html gd.distance.similarity html gd.dummy.populations html gd.genetic.distance html gd.list.irregular html gd.list.missing html gd.maize.aflp html gd.maize.lines html gd.maize.populations html gd.mk.matr html gd.pcoa html gd.salad.aflp html gd.similarity.coefficient html gd.splitdot html gd.status.zero.frequencies html generate.effect.file html generate.map.file html generate.population html genome.contribution html genome.parameter.get html genome.parameter.set html genome.segments html genotype.population html get.genome.par html get.map html get.mdp html get.population html get.population.gvalue html get.population.info html get.population.pvalue html get.population.size html get.score html gs.build.V html gs.build.esvs html gs.build.tsps html gs.build.z html gs.check.pvals html gs.compare.effects html gs.cross.eval.es html gs.cross.eval.gd html gs.cross.eval.gd.fct html gs.cross.eval.ma html gs.cross.eval.mi html gs.cross.eval.mu html gs.cross.eval.va html gs.cross.info html gs.cross.info.gd html gs.cross.validation html gs.esteff.lsq html gs.esteff.rmla html gs.esteff.rmlc html gs.esteff.rmlr html gs.esteff.rmlv html gs.esteff.rr html gs.estimate.gv html gs.get.V html gs.get.Z html gs.get.im html gs.get.info.level html gs.get.y html gs.info html gs.lambda.aov html gs.lambda.const html gs.lambda.emstep html gs.lambda.hsq html gs.lambda.reg html gs.lambda.rmla.02 html gs.lambda.rmla html gs.lambda.rmlc html gs.lambda.rmlr html gs.lambda.rmlv html gs.lambda.rrblup html gs.mme.coeff html gs.mme.invcoeff html gs.mme.restcoeff html gs.mme.restrhs html gs.mme.rhs html gs.mme.solve html gs.mmet.coeff.3 html gs.mmet.coeff html gs.mmet.rhs html gs.mmet.solve html gs.neg.effall html gs.plot.effects html gs.plot.model.fit html gs.plot.validation html gs.pos.effall html gs.predict.genotypes html gs.reset html gs.restrict.marker.data.01 html gs.return.effects html gs.return.pvals html gs.set.all.info.levels html gs.set.allele.codes html gs.set.effects html gs.set.info.level html gs.set.lambda html gs.set.num.threads html gs.set.performance.data html gs.single.marker.aov html gs.single.marker.reg html gs.start.timer html gs.stop.timer html gs.test.mp html gs.testeff.lsq html gs.testeff.rmlc html gs.testeff.rmlv html gs.vc.rrblup html gs.w.aov html gs.write.pseff html homozygote html il.eval.library html il.eval.lines html il.ideal.library html il.overlapping.library html info html info.cat html init.population html lib00.map1 html lib00.map1a html lib00.map2 html linkage.drag html linkage.map.get html linkage.map.load html linkage.map.save html list.effects html list.populations html load.effmap html load.internal.effmap html load.linkage.map html mab.Examples html mab.Input.files html mab.compare html mab.df html mab.load.data html mab.save.inds html mab.simulate html mab.tabulate html optimize.population html ph.linkage.map.create html phenotype.population html plabsim.R.date html plabsim.R.version html plabsim html plabsim.init html plabsim.version html plant html population.append html population.concat html population.copy html population.divide html population.exist html population.individual.remove html population.info.get html population.info.set html population.list html population.matrix.load html population.matrix.save html population.name.swap html population.optimize html population.plabsim.load html population.plabsim.save html population.remove html population.remove.all html population.rename html population.resize html population.sample html population.size.get html population.sort html population.swap.name html population.transfer html remove.all.populations html remove.effmaps html remove.evaluate.population html remove.genotype.population html remove.map html remove.population html rename.population html reset.all html reset.mdp html resize.population html resources html return.population html rng.choose html rng.info html rng.init html rng.list html sample.population html save.linkage.map html sdev html sel.target.define html select.all.best html select.all.best.intern html select.genotypes html select.n.best html select.n.best.segments html set.NoLociInit html set.co.freq html set.eff.weigth html set.genome.par html set.info.level html set.mdp html set.population.gvalue html set.population.info html single.cross html sm.start.timer html sm.stop.timer html splitdt html ssd.mating html st.LDheatmap html st.LDplot.ld html st.LDplot.map html st.STvcf.to.dataframe html st.calc.ld.2 html st.calc.ld html st.calc.q html st.calc.rf html st.chrom.stats html st.copy.marker.data html st.datadir html st.dataframe.to.STvcf html st.dd html st.def.hblocks html st.genetic.distances.02 html st.genetic.distances html st.genetic.distances.fct html st.get.info.level html st.get.map html st.get.num.threads html st.get.simpop html st.get.simpop.perfdata html st.get.simpop2 html st.id html st.indir html st.info html st.load.performance.data html st.load.vcf.data html st.mark.alleles html st.marker.data.statistics html st.markerdata.to.STvcf html st.mxd html st.od html st.outdir html st.plot.corr html st.plot.corr.l html st.plot.gene.diversity html st.plot.ggt html st.plot.ggt.src html st.read.map html st.read.marker.data html st.read.marker.data.df html st.read.performance.data html st.recode.hbc html st.recode.hil html st.recode.ref.2 html st.recode.ref html st.reset html st.restrict.marker html st.return.performance.data html st.select.phen html st.set.hblocks html st.set.info.level html st.set.matrix.ops html st.set.num.threads html st.set.openblas.threads html st.set.sim.ef html st.set.sim.gp html st.set.sim.mp html st.set.sim.pp html st.set.simpop html st.simple.ggt.plot html st.start.timer html st.stop.timer html st.write.map html st.write.marker.data html st_mixed html summarize.gvalue html swap.population.name html talk.to.me html v-tropmaize-map html v-tropmaize-phe html v-tropmaize-pop html v-tropmaize-vcf html write.version.2 html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SelectionTools)