* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SelectionTools’ ...
** this is package ‘SelectionTools’ version ‘26.3’
** package ‘SelectionTools’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzddoaN/R.INSTALL274b9a7cd60d0a/SelectionTools/src'
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c MathLib12.c -o MathLib12.o
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SelectionTools01.c -o SelectionTools01.o
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SelectionTools02.c -o SelectionTools02.o
gcc-16 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SelectionTools.so MathLib12.o SelectionTools01.o SelectionTools02.o -lm -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzddoaN/R.INSTALL274b9a7cd60d0a/SelectionTools/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzddoaN/R.INSTALL274b9a7cd60d0a/SelectionTools/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzddoaN/R.INSTALL274b9a7cd60d0a/SelectionTools/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SelectionTools/00new/SelectionTools/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘SelectionTools’
finding HTML links ... done
DT_technow html
GS_ALLELE_MAX html
GS_STVCF_MAX_ALT html
Md_technow html
Mf_technow html
append.population html
be.quiet html
concat.population html
copy.population html
cross html
data.params html
define.effects html
define.effects.df html
define.genome html
define.map html
deprecated html
dh html
divide.population html
effect.weight.set.all html
effmap.remove html
effmap.remove.all html
evaluate.all.loci html
evaluate.allele html
evaluate.allele.freq html
evaluate.allele.freq2 html
evaluate.allele2 html
evaluate.genome html
evaluate.genotype html
evaluate.genotype2 html
evaluate.hap.calc html
evaluate.hap.calc.d html
evaluate.hap.free html
evaluate.hap.init html
evaluate.hap.return.genotype html
evaluate.hap.return.table html
evaluate.haplotype html
evaluate.ld html
evaluate.locus html
evaluate.mdp html
evaluate.population html
gd.allele.frequencies html
gd.allow.zero.frequencies html
gd.correct.missing html
gd.data.parameters html
gd.distance.similarity html
gd.dummy.populations html
gd.genetic.distance html
gd.list.irregular html
gd.list.missing html
gd.maize.aflp html
gd.maize.lines html
gd.maize.populations html
gd.mk.matr html
gd.pcoa html
gd.salad.aflp html
gd.similarity.coefficient html
gd.splitdot html
gd.status.zero.frequencies html
generate.effect.file html
generate.map.file html
generate.population html
genome.contribution html
genome.parameter.get html
genome.parameter.set html
genome.segments html
genotype.population html
get.genome.par html
get.map html
get.mdp html
get.population html
get.population.gvalue html
get.population.info html
get.population.pvalue html
get.population.size html
get.score html
gs.build.V html
gs.build.esvs html
gs.build.tsps html
gs.build.z html
gs.check.pvals html
gs.compare.effects html
gs.cross.eval.es html
gs.cross.eval.gd html
gs.cross.eval.gd.fct html
gs.cross.eval.ma html
gs.cross.eval.mi html
gs.cross.eval.mu html
gs.cross.eval.va html
gs.cross.info html
gs.cross.info.gd html
gs.cross.validation html
gs.esteff.lsq html
gs.esteff.rmla html
gs.esteff.rmlc html
gs.esteff.rmlr html
gs.esteff.rmlv html
gs.esteff.rr html
gs.estimate.gv html
gs.get.V html
gs.get.Z html
gs.get.im html
gs.get.info.level html
gs.get.y html
gs.info html
gs.lambda.aov html
gs.lambda.const html
gs.lambda.emstep html
gs.lambda.hsq html
gs.lambda.reg html
gs.lambda.rmla.02 html
gs.lambda.rmla html
gs.lambda.rmlc html
gs.lambda.rmlr html
gs.lambda.rmlv html
gs.lambda.rrblup html
gs.mme.coeff html
gs.mme.invcoeff html
gs.mme.restcoeff html
gs.mme.restrhs html
gs.mme.rhs html
gs.mme.solve html
gs.mmet.coeff.3 html
gs.mmet.coeff html
gs.mmet.rhs html
gs.mmet.solve html
gs.neg.effall html
gs.plot.effects html
gs.plot.model.fit html
gs.plot.validation html
gs.pos.effall html
gs.predict.genotypes html
gs.reset html
gs.restrict.marker.data.01 html
gs.return.effects html
gs.return.pvals html
gs.set.all.info.levels html
gs.set.allele.codes html
gs.set.effects html
gs.set.info.level html
gs.set.lambda html
gs.set.num.threads html
gs.set.performance.data html
gs.single.marker.aov html
gs.single.marker.reg html
gs.start.timer html
gs.stop.timer html
gs.test.mp html
gs.testeff.lsq html
gs.testeff.rmlc html
gs.testeff.rmlv html
gs.vc.rrblup html
gs.w.aov html
gs.write.pseff html
homozygote html
il.eval.library html
il.eval.lines html
il.ideal.library html
il.overlapping.library html
info html
info.cat html
init.population html
lib00.map1 html
lib00.map1a html
lib00.map2 html
linkage.drag html
linkage.map.get html
linkage.map.load html
linkage.map.save html
list.effects html
list.populations html
load.effmap html
load.internal.effmap html
load.linkage.map html
mab.Examples html
mab.Input.files html
mab.compare html
mab.df html
mab.load.data html
mab.save.inds html
mab.simulate html
mab.tabulate html
optimize.population html
ph.linkage.map.create html
phenotype.population html
plabsim.R.date html
plabsim.R.version html
plabsim html
plabsim.init html
plabsim.version html
plant html
population.append html
population.concat html
population.copy html
population.divide html
population.exist html
population.individual.remove html
population.info.get html
population.info.set html
population.list html
population.matrix.load html
population.matrix.save html
population.name.swap html
population.optimize html
population.plabsim.load html
population.plabsim.save html
population.remove html
population.remove.all html
population.rename html
population.resize html
population.sample html
population.size.get html
population.sort html
population.swap.name html
population.transfer html
remove.all.populations html
remove.effmaps html
remove.evaluate.population html
remove.genotype.population html
remove.map html
remove.population html
rename.population html
reset.all html
reset.mdp html
resize.population html
resources html
return.population html
rng.choose html
rng.info html
rng.init html
rng.list html
sample.population html
save.linkage.map html
sdev html
sel.target.define html
select.all.best html
select.all.best.intern html
select.genotypes html
select.n.best html
select.n.best.segments html
set.NoLociInit html
set.co.freq html
set.eff.weigth html
set.genome.par html
set.info.level html
set.mdp html
set.population.gvalue html
set.population.info html
single.cross html
sm.start.timer html
sm.stop.timer html
splitdt html
ssd.mating html
st.LDheatmap html
st.LDplot.ld html
st.LDplot.map html
st.STvcf.to.dataframe html
st.calc.ld.2 html
st.calc.ld html
st.calc.q html
st.calc.rf html
st.chrom.stats html
st.copy.marker.data html
st.datadir html
st.dataframe.to.STvcf html
st.dd html
st.def.hblocks html
st.genetic.distances.02 html
st.genetic.distances html
st.genetic.distances.fct html
st.get.info.level html
st.get.map html
st.get.num.threads html
st.get.simpop html
st.get.simpop.perfdata html
st.get.simpop2 html
st.id html
st.indir html
st.info html
st.load.performance.data html
st.load.vcf.data html
st.mark.alleles html
st.marker.data.statistics html
st.markerdata.to.STvcf html
st.mxd html
st.od html
st.outdir html
st.plot.corr html
st.plot.corr.l html
st.plot.gene.diversity html
st.plot.ggt html
st.plot.ggt.src html
st.read.map html
st.read.marker.data html
st.read.marker.data.df html
st.read.performance.data html
st.recode.hbc html
st.recode.hil html
st.recode.ref.2 html
st.recode.ref html
st.reset html
st.restrict.marker html
st.return.performance.data html
st.select.phen html
st.set.hblocks html
st.set.info.level html
st.set.matrix.ops html
st.set.num.threads html
st.set.openblas.threads html
st.set.sim.ef html
st.set.sim.gp html
st.set.sim.mp html
st.set.sim.pp html
st.set.simpop html
st.simple.ggt.plot html
st.start.timer html
st.stop.timer html
st.write.map html
st.write.marker.data html
st_mixed html
summarize.gvalue html
swap.population.name html
talk.to.me html
v-tropmaize-map html
v-tropmaize-phe html
v-tropmaize-pop html
v-tropmaize-vcf html
write.version.2 html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SelectionTools)