* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SelectSim’ ...
** this is package ‘SelectSim’ version ‘0.1.6’
** package ‘SelectSim’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.3.0-1) 15.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5zn5ZJ/R.INSTALL1bddb544998a89/SelectSim/src'
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c code.cpp -o code.o
g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SelectSim.so RcppExports.o code.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5zn5ZJ/R.INSTALL1bddb544998a89/SelectSim/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5zn5ZJ/R.INSTALL1bddb544998a89/SelectSim/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5zn5ZJ/R.INSTALL1bddb544998a89/SelectSim/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SelectSim/00new/SelectSim/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘SelectSim’
    finding HTML links ... done
    GENIE_maf_schema                        html  
    TCGA_maf_schema                         html  
    add                                     html  
    al.pairwise.alteration.stats            html  
    al.stats                                html  
    am.pairwise.alteration.coverage         html  
    am.pairwise.alteration.overlap          html  
    am.stats                                html  
    am.weight.pairwise.alteration.overlap   html  
    binary.yule                             html  
    effectSize                              html  
    estimateFDR2                            html  
    estimate_p_val                          html  
    estimate_pairwise_p                     html  
    filter_maf_column                       html  
    filter_maf_complex                      html  
    filter_maf_gene.name                    html  
    filter_maf_ignore                       html  
    filter_maf_missense                     html  
    filter_maf_mutation.type                html  
    filter_maf_mutations                    html  
    filter_maf_sample                       html  
    filter_maf_schema                       html  
    filter_maf_truncating                   html  
    generateS                               html  
    generateW_block                         html  
    generateW_mean_tmb                      html  
    get.blocks                              html  
    interaction.table                       html  
    luad_maf                                html  
    luad_result                             html  
    luad_run_data                           html  
    maf2gam                                 html  
    mutation_type                           html  
    new.AL.general                          html  
    new.ALS                                 html  
    new.AMS                                 html  
    null_model_parallel                     html  
    obs_exp_scatter                         html  
    oncokb_genes                            html  
    oncokb_truncating_genes                 html  
    overlap_pair_extract                    html  
    r.am.pairwise.alteration.overlap        html  
    r.effectSize                            html  
    retrieveOutliers                        html  
    ridge_plot_ed                           html  
    ridge_plot_ed_compare                   html  
    selectX                                 html  
    stat_maf_column                         html  
    stat_maf_gene                           html  
    stat_maf_sample                         html  
    template.obj.gen                        html  
    theme_Publication                       html  
    variant_catalogue                       html  
    w.r.am.pairwise.alteration.overlap      html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SelectSim)