* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SeaSondeR’ ...
** this is package ‘SeaSondeR’ version ‘0.2.8’
** package ‘SeaSondeR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘SeaSondeR’
finding HTML links ... done
SeaSondeRAPM_SiteOrigin_override_step_text
html
SeaSondeRAPM_amplitude_and_phase_corrections_step_text
html
SeaSondeRAPM_amplitude_factors_override_step_text
html
SeaSondeRAPM_antenna_bearing_override_step_text
html
SeaSondeRAPM_creation_step_text html
SeaSondeRAPM_phase_correction_override_step_text
html
SeaSondeRAPM_smoothing_step_text html
SeaSondeRAPM_trimming_step_text html
SeaSondeRCS_MUSIC_validate_doppler_interpolation
html
SeaSondeRCS_creation_step_text html
compound html
dB_to_self_spectra html
new_SeaSondeRCS html
parse_metadata_line html
pipe html
print.SeaSondeRAPM html
print.SeaSondeRCS html
process_version_header html
qc_check_range html
qc_check_type html
qc_check_unsigned html
readV6BlockData html
read_and_qc_field html
read_matrix_row html
seasonder_Bins2DopplerFreq html
seasonder_Bins2NormalizedDopplerFreq html
seasonder_CSSW2CSData html
seasonder_CSSW2CSHeader html
seasonder_CSSW_read_asign html
seasonder_CSSY2CSData html
seasonder_CSSY2CSHeader html
seasonder_CSSY_read_asign html
seasonder_CSSY_read_csign html
seasonder_DopplerFreq2Bins html
seasonder_DopplerFreq2NormalizedDopplerFreq
html
seasonder_MUSICBearing2GeographicalBearing
html
seasonder_MUSICCheckEigenValueRatio html
seasonder_MUSICCheckSignalMatrix html
seasonder_MUSICCheckSignalPowers html
seasonder_MUSICComputeCov html
seasonder_MUSICComputeDOAProjections html
seasonder_MUSICComputePropDualSols html
seasonder_MUSICComputeSignalPowerMatrix
html
seasonder_MUSICCovDecomposition html
seasonder_MUSICExtractDOASolutions html
seasonder_MUSICExtractPeaks html
seasonder_MUSICExtractPeaksCheckRetainedSolution
html
seasonder_MUSICInitCov html
seasonder_MUSICInitDOASolutions html
seasonder_MUSICInitEigenDecomp html
seasonder_MUSICInitInterpolatedData html
seasonder_MUSICInitProjections html
seasonder_MUSICLonLat html
seasonder_MUSICSelectDOA html
seasonder_MUSICTestDualSolutions html
seasonder_MUSIC_Bins2DopplerFreq html
seasonder_MUSIC_DopplerFreq2Bins html
seasonder_NULLSeaSondeRCS_MUSIC html
seasonder_NormalizedDopplerFreq2Bins html
seasonder_NormalizedDopplerFreq2DopplerFreq
html
seasonder_SeaSondeRCSExportFORBoundaries
html
seasonder_SeaSondeRCSMUSICInterpolateDoppler
html
seasonder_SeaSondeRCSSWApplyScaling html
seasonder_SeaSondeRCSSYApplyScaling html
seasonder_SeaSondeRCS_plotSelfSpectrum
html
seasonder_SelfSpectra2dB html
seasonder_SmoothFORSS html
seasonder_SmoothSS html
seasonder_SwapDopplerUnits html
seasonder_applyAPMAmplitudeAndPhaseCorrections
html
seasonder_applyCSSWSigns html
seasonder_areLogsEnabled html
seasonder_areMessagesEnabled html
seasonder_asJSONSeaSondeRCSData html
seasonder_asJSONSeaSondeRCSHeader html
seasonder_check_specs html
seasonder_computeBinsRadialVelocity html
seasonder_computeCenterDopplerBin html
seasonder_computeDopplerBinsFrequency html
seasonder_computeDopplerFreq2Bins html
seasonder_computeFORs html
seasonder_computeFORsSeaSondeMethod html
seasonder_computeLonLatFromOriginDistBearing
html
seasonder_computeNoiseLevel html
seasonder_computePowerMatrix html
seasonder_compute_antenna_pattern_proyections
html
seasonder_createSeaSondeRAPM html
seasonder_createSeaSondeRCS html
seasonder_createSeaSondeRCS.character html
seasonder_createSeaSondeRCS.list html
seasonder_defaultFOR_parameters html
seasonder_defaultMUSICOptions html
seasonder_defaultMUSIC_parameters html
seasonder_defaultSpecsFilePath html
seasonder_defaultSpecsPathForFile html
seasonder_disableLogs html
seasonder_disableMessages html
seasonder_disable_all_debug_points html
seasonder_enableLogs html
seasonder_enableMessages html
seasonder_enable_debug_points html
seasonder_estimateReferenceNoiseNormalizedLimits
html
seasonder_exportCSVMUSICTable html
seasonder_exportCTFRangeInfo html
seasonder_exportLLUVRadialMetrics html
seasonder_exportMUSICTable html
seasonder_exportRadialMetrics html
seasonder_exportRangeInfo html
seasonder_extractFOR html
seasonder_extractSeaSondeRCS_dopplerRanges_from_SSdata
html
seasonder_extrapolateAPM html
seasonder_filterFORAmplitudes html
seasonder_findFORNulls html
seasonder_findFORNullsInFOR html
seasonder_findFORNullsInSSMatrix html
seasonder_findFORNullsInSpectrum html
seasonder_find_spectra_file_type html
seasonder_getBinsRadialVelocity html
seasonder_getBraggDopplerAngularFrequency
html
seasonder_getBraggLineBins html
seasonder_getBraggWaveLength html
seasonder_getCSHeaderByPath html
seasonder_getCenterDopplerBin html
seasonder_getCenterFreqMHz html
seasonder_getDopplerBinsFrequency html
seasonder_getDopplerSpectrumResolution
html
seasonder_getFORParameter html
seasonder_getFOR_currmax html
seasonder_getFOR_fdown html
seasonder_getFOR_flim html
seasonder_getFOR_noisefact html
seasonder_getFOR_nsm html
seasonder_getFOR_parameters html
seasonder_getLog html
seasonder_getMUSICConfig html
seasonder_getMUSICDopplerInterpolation
html
seasonder_getMUSICDualSolutionsProportion
html
seasonder_getMUSICInterpolatedData html
seasonder_getMUSICInterpolatedDopplerCellsIndex
html
seasonder_getMUSICOptions html
seasonder_getRadarWaveLength html
seasonder_getRadarWaveNumber html
seasonder_getRadialVelocityResolution html
seasonder_getReceiverGain_dB html
seasonder_getSeaSondeRAPM_AmplitudeFactors
html
seasonder_getSeaSondeRAPM_AntennaBearing
html
seasonder_getSeaSondeRAPM_BEAR html
seasonder_getSeaSondeRAPM_BearingResolution
html
seasonder_getSeaSondeRAPM_CommentLine html
seasonder_getSeaSondeRAPM_CreateTimeStamp
html
seasonder_getSeaSondeRAPM_Creator html
seasonder_getSeaSondeRAPM_FileID html
seasonder_getSeaSondeRAPM_FileName html
seasonder_getSeaSondeRAPM_PhaseCorrections
html
seasonder_getSeaSondeRAPM_ProcessingSteps
html
seasonder_getSeaSondeRAPM_SiteName html
seasonder_getSeaSondeRAPM_SiteOrigin html
seasonder_getSeaSondeRAPM_Smoothing html
seasonder_getSeaSondeRAPM_StationCode html
seasonder_getSeaSondeRAPM_Type html
seasonder_getSeaSondeRAPM_quality_matrix
html
seasonder_getSeaSondeRCS_APM html
seasonder_getSeaSondeRCS_FOR html
seasonder_getSeaSondeRCS_FORConfig html
seasonder_getSeaSondeRCS_FOR_SS_Smoothed
html
seasonder_getSeaSondeRCS_MUSIC html
seasonder_getSeaSondeRCS_MUSIC_BinsRadialVelocity
html
seasonder_getSeaSondeRCS_MUSIC_CenterDopplerBin
html
seasonder_getSeaSondeRCS_MUSIC_DopplerBinsFrequency
html
seasonder_getSeaSondeRCS_MUSIC_DopplerSpectrumResolution
html
seasonder_getSeaSondeRCS_MUSIC_nDopplerCells
html
seasonder_getSeaSondeRCS_MUSIC_parameters
html
seasonder_getSeaSondeRCS_ProcessingSteps
html
seasonder_getSeaSondeRCS_SelfSpectra html
seasonder_getSeaSondeRCS_antenna_SSdata
html
seasonder_getSeaSondeRCS_data html
seasonder_getSeaSondeRCS_dataMatrix html
seasonder_getSeaSondeRCS_header html
seasonder_getSeaSondeRCS_headerField html
seasonder_getSeaSondeRCS_reference_noise_normalized_limits_estimation_interval
html
seasonder_getVersion html
seasonder_getVersion.SeaSondeRAPM html
seasonder_getVersion.SeaSondeRCS html
seasonder_get_enabled_debug_points html
seasonder_getnDopplerCells html
seasonder_getnRangeCells html
seasonder_initCSDataStructure html
seasonder_initMUSICData html
seasonder_initSeaSondeRCS_MUSIC html
seasonder_initializeAttributesSeaSondeRAPM
html
seasonder_int_to_raw html
seasonder_is_debug_point_enabled html
seasonder_lastLog html
seasonder_limitFORCurrentRange html
seasonder_log html
seasonder_logAndAbort html
seasonder_logAndMessage html
seasonder_logArchiver html
seasonder_plotAPMLoops html
seasonder_raw_to_int html
seasonder_readCSField html
seasonder_readCSSWBody html
seasonder_readCSSWBodyRangeCell html
seasonder_readCSSWFields html
seasonder_readCSSWHeader html
seasonder_readCSSWLims html
seasonder_readCSSYBodyRangeCell html
seasonder_readCSSYHeader html
seasonder_readPhaseFile html
seasonder_readSeaSondeCSFile html
seasonder_readSeaSondeCSFileBlock html
seasonder_readSeaSondeCSFileData html
seasonder_readSeaSondeCSFileHeader html
seasonder_readSeaSondeCSFileHeaderV1 html
seasonder_readSeaSondeCSFileHeaderV2 html
seasonder_readSeaSondeCSFileHeaderV3 html
seasonder_readSeaSondeCSFileHeaderV4 html
seasonder_readSeaSondeCSFileHeaderV5 html
seasonder_readSeaSondeCSFileHeaderV6 html
seasonder_readSeaSondeRAPMFile html
seasonder_readSeaSondeRCSSWFile html
seasonder_readSeaSondeRCSSYFile html
seasonder_readYAMLSpecs html
seasonder_read_reduced_encoded_data html
seasonder_rejectDistantBragg html
seasonder_rejectDistantBraggPeakTest html
seasonder_rejectNoiseIonospheric html
seasonder_rejectNoiseIonosphericTest html
seasonder_rerun_qc_with_fun html
seasonder_runMUSIC html
seasonder_runMUSICInFOR html
seasonder_setFORParameter html
seasonder_setFOR_currmax html
seasonder_setFOR_fdown html
seasonder_setFOR_flim html
seasonder_setFOR_noisefact html
seasonder_setFOR_nsm html
seasonder_setFOR_parameters html
seasonder_setMUSICOption html
seasonder_setMUSICOptions html
seasonder_setNoiseLevelEstimationInterval
html
seasonder_setSeaSondeRAPM_AmplitudeFactors
html
seasonder_setSeaSondeRAPM_AntennaBearing
html
seasonder_setSeaSondeRAPM_BEAR html
seasonder_setSeaSondeRAPM_BearingResolution
html
seasonder_setSeaSondeRAPM_CommentLine html
seasonder_setSeaSondeRAPM_CreateTimeStamp
html
seasonder_setSeaSondeRAPM_Creator html
seasonder_setSeaSondeRAPM_FileID html
seasonder_setSeaSondeRAPM_FileName html
seasonder_setSeaSondeRAPM_PhaseCorrections
html
seasonder_setSeaSondeRAPM_ProcessingSteps
html
seasonder_setSeaSondeRAPM_SiteName html
seasonder_setSeaSondeRAPM_SiteOrigin html
seasonder_setSeaSondeRAPM_Smoothing html
seasonder_setSeaSondeRAPM_StationCode html
seasonder_setSeaSondeRAPM_Type html
seasonder_setSeaSondeRAPM_quality_matrix
html
seasonder_setSeaSondeRCS_APM html
seasonder_setSeaSondeRCS_FOR html
seasonder_setSeaSondeRCS_FOR_MAXP html
seasonder_setSeaSondeRCS_FOR_MAXP.bin html
seasonder_setSeaSondeRCS_FOR_SS_Smoothed
html
seasonder_setSeaSondeRCS_FOR_method html
seasonder_setSeaSondeRCS_MUSIC html
seasonder_setSeaSondeRCS_MUSIC_doppler_interpolation
html
seasonder_setSeaSondeRCS_MUSIC_dual_solutions_proportion
html
seasonder_setSeaSondeRCS_MUSIC_interpolated_data
html
seasonder_setSeaSondeRCS_MUSIC_parameters
html
seasonder_setSeaSondeRCS_NoiseLevel html
seasonder_setSeaSondeRCS_ProcessingSteps
html
seasonder_setSeaSondeRCS_data html
seasonder_setSeaSondeRCS_header html
seasonder_skip_cs_field html
seasonder_skip_cs_file html
seasonder_smoothAPM html
seasonder_splitLog html
seasonder_trimAPM html
seasonder_v6_skip_transformation html
seasonder_validateAttributesSeaSondeRAPM
html
seasonder_validateCSDataStructure html
seasonder_validateCSFileData html
seasonder_validateCSHeaderStructure html
seasonder_validateCalibrationMatrixSeaSondeRAPM
html
seasonder_validateFORMethod html
seasonder_validateFOR_parameters html
self_spectra_to_dB html
summary.SeaSondeRAPM html
summary.SeaSondeRCS html
validate_SeaSondeRAPM_AmplitudeFactors
html
validate_SeaSondeRAPM_AntennaBearing html
validate_SeaSondeRAPM_BEAR html
validate_SeaSondeRAPM_BearingResolution
html
validate_SeaSondeRAPM_CommentLine html
validate_SeaSondeRAPM_CreateTimeStamp html
validate_SeaSondeRAPM_Creator html
validate_SeaSondeRAPM_FileID html
validate_SeaSondeRAPM_FileName html
validate_SeaSondeRAPM_PhaseCorrections
html
validate_SeaSondeRAPM_ProcessingSteps html
validate_SeaSondeRAPM_SiteName html
validate_SeaSondeRAPM_SiteOrigin html
validate_SeaSondeRAPM_Smoothing html
validate_SeaSondeRAPM_StationCode html
validate_SeaSondeRAPM_Type html
validate_SeaSondeRAPM_quality_matrix html
validate_SeaSondeRCS_ProcessingSteps html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SeaSondeR)