* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SVAlignR’ ...
** this is package ‘SVAlignR’ version ‘0.9.2’
** package ‘SVAlignR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘SVAlignR’
    finding HTML links ... done
    00-datasets                             html  
    01-cipher                               html  
    02-seqclust                             html  
    03-align                                html  
    05-stringGraph                          html  
    06-words                                html  
    07-breakpoints                          html  
    08-debruijn                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SVAlignR)