* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SQUIRE’ ...
** this is package ‘SQUIRE’ version ‘1.0.0’
** package ‘SQUIRE’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘SQUIRE’
    finding HTML links ... done
    SQUIRE                                  html  
    assess_data_quality                     html  
    calculate_response_metric               html  
    calibrate_galahad_parameters            html  
    calibrate_optimization_parameters       html  
    compile_optimization_results            html  
    describe_treatment_effects              html  
    determine_geometry_partitioning         html  
    fit_biological_model                    html  
    fit_germination_model                   html  
    generate_biological_interpretation      html  
    generate_recommendations                html  
    get_biological_meaning                  html  
    perform_validated_optimization          html  
    summarize_biological_effects            html  
    summary.SQUIRE                          html  
    test_treatment_effects                  html  
    validate_biological_effects             html  
    validate_optimized_parameters           html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SQUIRE)