* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SPECIES’ ...
** package ‘SPECIES’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpwWaMdm/R.INSTALL1c2917bf9dcda/SPECIES/src'
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c PPCG.f90 -o PPCG.o
PPCG.f90:437:38:
437 | theta_0=0.5*theta_0+0.5*thetaOld
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
PPCG.f90:534:62:
534 | IF (lambda1==0 .OR. lambda1<0 .OR. lambda1>100 .OR. sum_b .EQ. 0.D0) THEN
| ^
Warning: ‘sum_b’ may be used uninitialized [-Wmaybe-uninitialized]
PPCG.f90:465:36:
465 | DOUBLE PRECISION n(50),sum_a,sum_b,Etol,z(t,noZeroP),d1,d2
| ^
note: ‘sum_b’ was declared here
PPCG.f90:177:9:
177 | IF (predict(k)<max_predict) THEN
| ^
Warning: ‘max_predict’ may be used uninitialized [-Wmaybe-uninitialized]
PPCG.f90:95:63:
95 | DOUBLE PRECISION test,Pmix,PmixScon,alpha(alphaK),max_predict, gamma2
| ^
note: ‘max_predict’ was declared here
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c WLunpmle.f90 -o WLunpmle.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c norrispollock.f90 -o norrispollock.o
norrispollock.f90:108:86:
108 | like=like+lgamma(SUM(n1(2:(t+1)))+n00+1)-lgamma(n00+1)-lgamma(SUM(n1(2:(t+1)))+1)
| ^
Warning: ‘n00’ may be used uninitialized [-Wmaybe-uninitialized]
norrispollock.f90:67:44:
67 | DOUBLE PRECISION like,tempprob,lgamma,n00, untrunPmix
| ^
note: ‘n00’ was declared here
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c pnpmle.f90 -o pnpmle.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c shared.f90 -o shared.o
shared.f90:535:0:
535 | DOUBLE PRECISION FUNCTION lgamma(X)
|
Warning: ‘lgamma’ declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. [-Wintrinsic-shadow]
shared.f90:209:62:
209 | IF (lambda1==0 .OR. lambda1<0 .OR. lambda1>100 .OR. sum_b .EQ. 0.D0) THEN
| ^
Warning: ‘sum_b’ may be used uninitialized [-Wmaybe-uninitialized]
shared.f90:148:36:
148 | DOUBLE PRECISION n(50),sum_a,sum_b,Etol,z(t,noZeroP),d1,d2
| ^
note: ‘sum_b’ was declared here
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SPECIES.so PPCG.o WLunpmle.o norrispollock.o pnpmle.o shared.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpwWaMdm/R.INSTALL1c2917bf9dcda/SPECIES/src'
make[1]: Entering directory '/tmp/RtmpwWaMdm/R.INSTALL1c2917bf9dcda/SPECIES/src'
make[1]: Leaving directory '/tmp/RtmpwWaMdm/R.INSTALL1c2917bf9dcda/SPECIES/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SPECIES/00new/SPECIES/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘SPECIES’
finding HTML links ... done
ChaoBunge html
ChaoLee1992 html
EST html
SPECIES.package html
butterfly html
chao1984 html
cottontail html
insects html
jackknife html
microbial html
pcg html
pnpmle html
traffic html
unpmle html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SPECIES)