* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SPECIES’ ...
** this is package ‘SPECIES’ version ‘1.2.0’
** package ‘SPECIES’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using Fortran compiler: ‘GNU Fortran (Debian 14.3.0-8) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpokIISh/R.INSTALL2c9a2237da97a9/SPECIES/src'
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  PPCG.f90 -o PPCG.o
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  WLunpmle.f90 -o WLunpmle.o
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  norrispollock.f90 -o norrispollock.o
norrispollock.f90:108:80:

  108 |      like=like+lgam(SUM(n1(2:(t+1)))+n00+1)-lgam(n00+1)-lgam(SUM(n1(2:(t+1)))+1)
      |                                                                                ^
Warning: ‘n00’ may be used uninitialized [-Wmaybe-uninitialized]
norrispollock.f90:67:42:

   67 |   DOUBLE PRECISION  like,tempprob,lgam,n00, untrunPmix
      |                                          ^
note: ‘n00’ was declared here
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  pnpmle.f90 -o pnpmle.o
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c  shared.f90 -o shared.o
shared.f90:209:62:

  209 |            IF (lambda1==0 .OR. lambda1<0 .OR. lambda1>100 .OR. sum_b .EQ. 0.D0) THEN
      |                                                              ^
Warning: ‘sum_b’ may be used uninitialized [-Wmaybe-uninitialized]
shared.f90:148:36:

  148 |   DOUBLE PRECISION n(50),sum_a,sum_b,Etol,z(t,noZeroP),d1,d2
      |                                    ^
note: ‘sum_b’ was declared here
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SPECIES.so PPCG.o WLunpmle.o norrispollock.o pnpmle.o shared.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpokIISh/R.INSTALL2c9a2237da97a9/SPECIES/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpokIISh/R.INSTALL2c9a2237da97a9/SPECIES/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpokIISh/R.INSTALL2c9a2237da97a9/SPECIES/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SPECIES/00new/SPECIES/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘SPECIES’
    finding HTML links ... done
    ChaoBunge                               html  
    ChaoLee1992                             html  
    EST                                     html  
    SPECIES.package                         html  
    butterfly                               html  
    chao1984                                html  
    cottontail                              html  
    insects                                 html  
    jackknife                               html  
    microbial                               html  
    pcg                                     html  
    pnpmle                                  html  
    traffic                                 html  
    unpmle                                  html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SPECIES)