* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SNPassoc’ ...
** this is package ‘SNPassoc’ version ‘2.3.1’
** package ‘SNPassoc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTlaErl/R.INSTALL2a0aa47bd0eaf0/SNPassoc/src'
gcc-15 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SNPassoc_init.c -o SNPassoc_init.o
gcc-15 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c groupsum.c -o groupsum.o
gcc-15 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c haplo_em_pin.c -o haplo_em_pin.o
gcc-15 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c louis_info.c -o louis_info.o
gcc-15 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seqhap.c -o seqhap.o
gcc-15 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SNPassoc.so SNPassoc_init.o groupsum.o haplo_em_pin.o louis_info.o seqhap.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTlaErl/R.INSTALL2a0aa47bd0eaf0/SNPassoc/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTlaErl/R.INSTALL2a0aa47bd0eaf0/SNPassoc/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTlaErl/R.INSTALL2a0aa47bd0eaf0/SNPassoc/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SNPassoc/00new/SNPassoc/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘SNPassoc’
finding HTML links ... done
BonferroniSig html
GenomicControl html
Ginv html
HapMap html
HapMap.SNPs.pos html
LD html
SNPassoc-internal html
SNPs html
SNPs.info.pos html
TableNPer html
Tablemeanse html
WGassociation html
association html
asthma html
getGeneSymbol html
getNiceTable html
getSignificantSNPs html
haplo.em html
haplo.em.control html
haplo.glm html
haplo.glm.control html
haplo.model.frame html
haplo.score html
haplo.score.slide html
haplointeraction html
hla.demo html
inheritance html
int html
interactionPval html
intervals html
isMonomorphic html
louis.info html
makegeno html
maxstat html
na.geno.keep html
odds html
permTest html
plot.haplo.score html
plotMissing html
plotWGassociation html
printBanner html
qqpval html
related html
resHapMap html
scanWGassociation html
score.sim.control html
setupGeno html
setupSNP html
snp html
sortSNPs html
tableHWE html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SNPassoc)