* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SMITIDvisu’ ...
** package ‘SMITIDvisu’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-24) 13.2.0’
using C++11
make[1]: Entering directory '/tmp/RtmpQdejUR/R.INSTALL1c078e5d71c6b1/SMITIDvisu/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c kruskal.cpp -o kruskal.o
kruskal.cpp: In function ‘Rcpp::NumericMatrix mstCompute(const Rcpp::NumericMatrix&)’:
kruskal.cpp:29:13: warning: variable ‘cost’ set but not used [-Wunused-but-set-variable]
   29 |   long long cost = 0;
      |             ^~~~
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SMITIDvisu.so RcppExports.o kruskal.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpQdejUR/R.INSTALL1c078e5d71c6b1/SMITIDvisu/src'
make[1]: Entering directory '/tmp/RtmpQdejUR/R.INSTALL1c078e5d71c6b1/SMITIDvisu/src'
make[1]: Leaving directory '/tmp/RtmpQdejUR/R.INSTALL1c078e5d71c6b1/SMITIDvisu/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SMITIDvisu/00new/SMITIDvisu/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘SMITIDvisu’
    finding HTML links ... done
    SMITIDvisu-package                      html  
    SMITIDvisu-shiny                        html  
    createRainbowColors                     html  
    demo.SMITIDvisu.run                     html  
    df2geojson                              html  
    hostline                                html  
    maptt                                   html  
    mapttProxy                              html  
    mapttSelectHost                         html  
    mstCompute                              html  
    mstVariant                              html  
    mstVariantProxy                         html  
    st                                      html  
    st.dist113_2                            html  
    st.dist113_all                          html  
    st.listTimeProp113                      html  
    st.prop113_2                            html  
    st.prop113_all                          html  
    timeLine                                html  
    timeLineProxy                           html  
    transmissionTree                        html  
    transmissionTreeProxy                   html  
    tt.edges                                html  
    tt.events                               html  
    tt.nodes                                html  
    updateTimeLine                          html  
    updateTransmissionTree                  html  
    updatemstVariant                        html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘SMITIDvisu’ as ‘SMITIDvisu_0.0.9_R_x86_64-pc-linux-gnu.tar.gz’