* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SIMplyBee’ ...
** package ‘SIMplyBee’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘SIMplyBee’
    finding HTML links ... done
    Colony-class                            html  
    finding level-2 HTML links ... done

    MultiColony-class                       html  
    SIMplyBee-package                       html  
    SimParamBee                             html  
    addCastePop                             html  
    buildUp                                 html  
    calcBeeGRMIbd                           html  
    calcBeeGRMIbs                           html  
    calcColonyValue                         html  
    calcInheritanceCriterion                html  
    calcPerformanceCriterion                html  
    calcQueensPHomBrood                     html  
    calcSelectionCriterion                  html  
    collapse                                html  
    combine                                 html  
    combineBeeGametes                       html  
    combineBeeGametesHaploDiploid           html  
    combineNULLAndPop                       html  
    createCastePop                          html  
    createColony                            html  
    createDCA                               html  
    createMatingStationDCA                  html  
    createMultiColony                       html  
    createRandomCrossPlan                   html  
    cross                                   html  
    downsize                                html  
    downsizePFun                            html  
    editCsdLocus                            html  
    getAa                                   html  
    getBv                                   html  
    getCaste                                html  
    getCasteId                              html  
    getCastePop                             html  
    getCasteSex                             html  
    getCsdAlleles                           html  
    getCsdGeno                              html  
    getDd                                   html  
    getEvents                               html  
    getGv                                   html  
    getIbdHaplo                             html  
    getId                                   html  
    getLocation                             html  
    getPheno                                html  
    getPooledGeno                           html  
    getQtlGeno                              html  
    getQtlHaplo                             html  
    getQueenAge                             html  
    getQueenYearOfBirth                     html  
    getSegSiteGeno                          html  
    getSegSiteHaplo                         html  
    getSnpGeno                              html  
    getSnpHaplo                             html  
    hasCollapsed                            html  
    hasSplit                                html  
    hasSuperseded                           html  
    hasSwarmed                              html  
    isCaste                                 html  
    isCsdActive                             html  
    isCsdHeterozygous                       html  
    isDronesPresent                         html  
    isEmpty                                 html  
    isFathersPresent                        html  
    isGenoHeterozygous                      html  
    isNULLColonies                          html  
    isProductive                            html  
    isQueenPresent                          html  
    isSimParamBee                           html  
    isVirginQueensPresent                   html  
    isWorkersPresent                        html  
    mapCasteToColonyValue                   html  
    nCaste                                  html  
    nColonies                               html  
    nCsdAlleles                             html  
    nDronesFun                              html  
    nFathersFun                             html  
    nVirginQueensFun                        html  
    nWorkersFun                             html  
    pullCastePop                            html  
    pullColonies                            html  
    pullDroneGroupsFromDCA                  html  
    pullInd                                 html  
    reQueen                                 html  
    reduceDroneGeno                         html  
    reduceDroneHaplo                        html  
    removeCastePop                          html  
    removeColonies                          html  
    replaceCastePop                         html  
    resetEvents                             html  
    selectColonies                          html  
    setLocation                             html  
    setQueensYearOfBirth                    html  
    simulateHoneyBeeGenomes                 html  
    split                                   html  
    splitPFun                               html  
    supersede                               html  
    swarm                                   html  
    swarmPFun                               html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SIMplyBee)